LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian3g00050	ATGTCCCTTAACTCTTTTCTCTCAGGTTCCAACCCCACCACCATGCCCATTCTGAAAGGCTCCTATTCAAGAGAAACAGTTCACGTAGCACCACCACCCATTATCACCAACGTCAAAGCAAGTGACTTGCTCAAACAACAATTGCTCAGTGTGCCAGCATTAGCGAAGGTTCTCGGTGGCACTTCATCACGCAGCACGGCGAGGCCACAACCCGCACCACCGCTCAGGCTTCATCGTTTTCTCGACGATTTTCCCTCTGAAACTCCCCAGAAGAGTACTCCGCAGAAGGCAAGAGAAGCAGCGACGGTGACTAACAAGGATACTGAAACTGAGAAGAAGTACGATGGTCGAATCCATAGCAATCCGCACAAGAAGAATGGGCCGTACACGTGCCCAAAGTGTAAGGGCGTGTTTGATACTTCTCAGCGGTTCGCATCGCACGCGAGTTCGATTCACTACAAGTTTGAGTCGAAAGGTGAGAGAAAGAAGAGGTTGACGGCGAGATACTATAAGAGAAATCCCCGTGTTGAATGGGTAAATGGTAAACCTACCATTGTTTGGGGAAATAACAAGAACAGTGTCGTTGTTCCTCCTCCTCATCCTCCACCTAGGGTTCTTCCAAAAACTGAGTGTGTTGTTGAGGAGCTTCTTCCTCCTCCTGGATTTGGAAAACCGATTCCTCCTCCTCCTGGATTTGGAAAACCGATTCCTCCTCTTGGATTTGGAAAACCGATTCTTCCTCCTCCTGGATTTGGAAAACCGATTCCTCCCCCTCTTGGATTTGAAAAACCGATTCTTCCTCCTCCGCCTGGATTTGGAAAACCCATTCTTCCTCCTCCTCCTGCATTTGGAAAACCGATTCTTCCTCCTCCTCCTGGATTTGGAAAACCTATTCCTCCTCCTCCTGGATTTGAGAATGTAAATTATGGTATACCTGGGTTTCATCTTCCTTTTCGATTTCATCAGAAATTAACTGGTGCAGTGTCCAAATCAAACTGGACATTCAATAGATGA	1014	0.4734	MSLNSFLSGSNPTTMPILKGSYSRETVHVAPPPIITNVKASDLLKQQLLSVPALAKVLGGTSSRSTARPQPAPPLRLHRFLDDFPSETPQKSTPQKAREAATVTNKDTETEKKYDGRIHSNPHKKNGPYTCPKCKGVFDTSQRFASHASSIHYKFESKGERKKRLTARYYKRNPRVEWVNGKPTIVWGNNKNSVVVPPPHPPPRVLPKTECVVEELLPPPGFGKPIPPPPGFGKPIPPLGFGKPILPPPGFGKPIPPPLGFEKPILPPPPGFGKPILPPPPAFGKPILPPPPGFGKPIPPPPGFENVNYGIPGFHLPFRFHQKLTGAVSKSNWTFNR	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian3g00050	337	ProSitePatterns	Zinc finger C2H2 type domain signature.	131	152	IPR013087	-
	Vian3g00050	337	MobiDBLite	consensus disorder prediction	82	127	-	-
	Vian3g00050	337	MobiDBLite	consensus disorder prediction	86	101	-	-
	Vian3g00050	337	MobiDBLite	consensus disorder prediction	102	122	-	-
	Vian3g00050	337	PANTHER	PROTEIN DIAPHANOUS	49	304	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian3g00050	Vian-Chr3	360848	361861	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian3g00050	102	172	C2H2 Transcription Factor Family	AT5G22990	57.746	1.06e-19	86.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Vian3g00050		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian3g00050	-		-	var:108325669	435.261