Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00028 ATGACGAACAGAAACAGGGAATGTTATTCAGACTGCAGCGAAATCAATTTTGCAGCATTTGGCGCCATGCAAGAAGAGAATAACGCAGCAGGGCCGTTGCTTCAGAAGTTCAAAGGCGTTGTGCCTCAACAAAACGGAAACTGGGGTGCCCAGATATATGCAAACCACCAGAGAATCTGGTTGGGGACTTTCAAATCGGAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGCATAAAACTCAGAAACGGAGACAGCCACAGAAACTTTCCATGGAACGATCAAACGGTGCAAGAGCCTCAGTTTCAAAGCCATTACAGCACAGAAACAATGCTGAGCATGATTAGAGATGGCACCTACCCTTCACGCTTTGCCACATTTCTCAGCACTCGTCAACAAGGTGGTGTTCTCAAGCACGTAACTTTGAAGGATGATGGCAAGGAGCAGCTTTGCTGCACCCAGCTTTTTCAGAAGGAGTTGACACCGAGTGATGTGGGGAAGCTCAACAGGCTTGTCATCCCGAAAAAGCATGCAGTCACATATTTTCCTAACGTGTGTGACGGCGGCGCAGAATCGCATGAAGAAAATGTGAGTGCTGACGTTGAGGTTGCGTTTTACGACAGGCTCATGAGACAGTGGAAATTTCGATACTGTTATTGGAAGAGCAGCCAAAGCTACGTGTTCACGAGAGGGTGGAATCGGTTTGTGAAGGACAAAAAACTGAAGGCTAAGGATACCATTGCGTTTTTCACGTGTGAACCTGTGGATTGCAGAAAAGGAGGAGAGGGAGAAGCTTTTGGATTGATTGATGTAATCTATAGTTCAGATGAAGACACCAAAGATGAACACACTTTAAAGGATTTGAATGCAGAAAAGGGTTTGAAACTCTTTGGAGTTTTGATCAAATAG 909 0.4565 MTNRNRECYSDCSEINFAAFGAMQEENNAAGPLLQKFKGVVPQQNGNWGAQIYANHQRIWLGTFKSEREAAMAYDSASIKLRNGDSHRNFPWNDQTVQEPQFQSHYSTETMLSMIRDGTYPSRFATFLSTRQQGGVLKHVTLKDDGKEQLCCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPNVCDGGAESHEENVSADVEVAFYDRLMRQWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAFFTCEPVDCRKGGEGEAFGLIDVIYSSDEDTKDEHTLKDLNAEKGLKLFGVLIK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00028 302 Gene3D - 152 264 IPR015300 -
Vian3g00028 302 Pfam AP2 domain 36 83 IPR001471 GO:0003700|GO:0006355
Vian3g00028 302 ProSiteProfiles B3 DNA-binding domain profile. 156 275 IPR003340 GO:0003677
Vian3g00028 302 Pfam B3 DNA binding domain 156 249 IPR003340 GO:0003677
Vian3g00028 302 Gene3D AP2/ERF domain 35 92 IPR036955 GO:0003700|GO:0006355
Vian3g00028 302 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Vian3g00028 302 FunFam AP2 domain-containing protein RAP2.8 35 92 - -
Vian3g00028 302 ProSiteProfiles AP2/ERF domain profile. 36 91 IPR001471 GO:0003700|GO:0006355
Vian3g00028 302 SMART rav1_2 36 97 IPR001471 GO:0003700|GO:0006355
Vian3g00028 302 SMART B3_2 156 260 IPR003340 GO:0003677
Vian3g00028 302 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Vian3g00028 302 SUPERFAMILY DNA-binding pseudobarrel domain 154 252 IPR015300 -
Vian3g00028 302 CDD B3_DNA 155 249 IPR003340 GO:0003677
Vian3g00028 302 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 299 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00028 Vian-Chr3 237993 238901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00028 36 271 RAV Transcription Factor Family AT1G51120 59.921 1.57e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Vian3g00028 B3 8.9e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00028 K09287 - gmx:102660503 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00028 3 237993 238901 Vian3g00028 3 237993 238901 ECH