Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00026 ATGGATCATCGCAAGAGGGGGAGGTCTGAAGCTGCCTTCAATGTCAATGGCGCCGCCAAGAAATTCAGACCAGAAACGGACTCCTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAAGGATGTCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAGCAGTCTCTCAGCTGATCAATGTTGGGAACGATCCTGGTATTCCTCATGTTGGTAGAAATCCTATTCCACCATCCTTCCCTGATGGGTCTTCTCCTCCGGTTGTTAAAACCCGATTGTGCAACAAGTTTAATACCGCTGAGGGTTGCAAATTTGGTGACAAGTGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAGGCCTACGGCTCCATCATATGAAGATCCCCGTGTTATGGGACAAATGCCAAGCAGCAGGATAGGTGGACGTCTGGAGCCCCAACTTCCAGCTCATGGCGCAGCTGCCAGCTTTGGAGCCTCGGCCACTGCAAAAATTAGTATCAATGCCGCACTAGCTGGAGCAGTGATTGGAAAAGGAGGCGTCAACTCAAAGCAAATTTGTCGTGTAACAGGAGCTAAACTTGCCGTAAGGGATCATGACACGGATTCTAACCTCAGAAACATCGAGCTTGAAGGCAGTCTTGATCAGATCAAGCAAGCCAGTGCAATGGTACACGAACTTATTTTAAATCTTAGTTCTGCCTCTGGGCCTCCAATGAAGACCTTTACTACACAGACTTCCGCCCCGGCAAGCAACTTCAAGACCAAGCTCTGCGAAAACTTCGCTAAAGGTTCCTGCACTTTTGGGGAAAGGTGTCACTTCGCTCATGGAACTGATGATTTGCGCAAGACTGGAATATGA 897 0.4861 MDHRKRGRSEAAFNVNGAAKKFRPETDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVGNDPGIPHVGRNPIPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVMGQMPSSRIGGRLEPQLPAHGAAASFGASATAKISINAALAGAVIGKGGVNSKQICRVTGAKLAVRDHDTDSNLRNIELEGSLDQIKQASAMVHELILNLSSASGPPMKTFTTQTSAPASNFKTKLCENFAKGSCTFGERCHFAHGTDDLRKTGI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00026 298 SUPERFAMILY CCCH zinc finger 98 131 IPR036855 GO:0046872
Vian3g00026 298 PANTHER CCCH ZINC FINGER/TIS11-RELATED 13 150 IPR045877 GO:0003729
Vian3g00026 298 FunFam Zinc finger CCCH domain-containing protein 95 132 - -
Vian3g00026 298 Pfam KH domain 175 237 IPR004088 GO:0003723
Vian3g00026 298 ProSiteProfiles Zinc finger C3H1-type profile. 101 128 IPR000571 GO:0046872
Vian3g00026 298 SUPERFAMILY CCCH zinc finger 263 294 IPR036855 GO:0046872
Vian3g00026 298 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 163 243 IPR036612 GO:0003723
Vian3g00026 298 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Vian3g00026 298 SMART c3hfinal6 264 290 IPR000571 GO:0046872
Vian3g00026 298 SMART c3hfinal6 102 127 IPR000571 GO:0046872
Vian3g00026 298 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Vian3g00026 298 CDD KH-I_AtC3H36_like 176 240 - -
Vian3g00026 298 FunFam Zinc finger CCCH domain-containing protein 259 295 - -
Vian3g00026 298 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Vian3g00026 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 289 IPR000571 GO:0046872
Vian3g00026 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Vian3g00026 298 Gene3D K Homology domain, type 1 168 259 IPR036612 GO:0003723
Vian3g00026 298 ProSiteProfiles Type-1 KH domain profile. 172 236 - -
Vian3g00026 298 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Vian3g00026 298 SMART kh_6 171 241 IPR004087 GO:0003676
Vian3g00026 298 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
Vian3g00026 298 Gene3D - 95 132 - -
Vian3g00026 298 Gene3D - 260 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00026 Vian-Chr3 223897 229101 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian3g00026 KH_1 2.3e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00026 - - gmx:100818781 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00026 3 223897 229101 Vian3g00026 3 223897 229101 ECH