Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00021 ATGTATCCTTCTTCCTCCTCCTCTTCCTCTTCGTCCTCCTCTTCTCAGTCCATGAGCCACGCGCCAACTGGCCTCACGCGCTACGGCTCCGCACCGGGCTCTCTCCTCACCACCACCGTCGATGCTCTCATCGGAGGATCACGCCCCACCCCCACCCCCACCCCTTACTATTCCGGAGGAGACTCTTCCGACTCCACCTGCAAAGACCAAACATCGTATCACAACCACGCCCTCGGATCCGCCTTGCTCCGTCAGAAAAGCTCTCCCGCCGGCTTCCTCTCCCACCTAGCATCCACAGCCACCGCCCCCACCCCCAATCACAACCACAATGGAGCGGGGTTCACAATCACGCGGGGTTCTCGGCTGAAGTCCCAGCTGAGCTTCACGGGTCACTGCCAAGAATCTCTCTGCGGCGGCGATAACACTAACAATGTGGTGCTTGGCGATCATGCCACCTTCGGAATGGAGCCTTGGGACGGTTCTCATTCTCATTCTAATTCCATCGCCTTTTCCGCTCCTCCAACTAAGCGCTCCAAAAGCTCCAACTCCAGCGAGCAAGACATTCTCCATTGCCTCAACGCCTTGGAATCTCAGTTTAGCCTTCCGCAGACCACTCTCGAAATGGCAACTGTCGAGAAGCTCTTGCACATTCCTGAAGATTCCGTCCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCCACTCATCCCCGCAGCATTGCCGAGCGGGAGAGAAGAACCAGAATAAGTGGAAAGCTCAAGAAATTGCAGGACCTTGTACCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAGCATATTAAAGGTCTTCAAACACAGGTTCAGCCTGAAGATTACTCAGCTGCTGGTGGAAAAATAGTTCAATATCAAGATTGGGATATTTTAGCACCCCTAAAACGTGCATTAGCTCTTGAAAACAAACAACTTGCTGATACAGGGCAATGTTACTGTCCTCCTTTGAGATTGTCGTGCTATCTGGTCACTTCGAACAACGCTATTTTTCTCACGTAG 1047 0.5244 MYPSSSSSSSSSSSSQSMSHAPTGLTRYGSAPGSLLTTTVDALIGGSRPTPTPTPYYSGGDSSDSTCKDQTSYHNHALGSALLRQKSSPAGFLSHLASTATAPTPNHNHNGAGFTITRGSRLKSQLSFTGHCQESLCGGDNTNNVVLGDHATFGMEPWDGSHSHSNSIAFSAPPTKRSKSSNSSEQDILHCLNALESQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQPEDYSAAGGKIVQYQDWDILAPLKRALALENKQLADTGQCYCPPLRLSCYLVTSNNAIFLT 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00021 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 282 IPR011598 GO:0046983
Vian3g00021 348 SMART finulus 238 288 IPR011598 GO:0046983
Vian3g00021 348 Pfam Helix-loop-helix DNA-binding domain 237 283 IPR011598 GO:0046983
Vian3g00021 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 287 IPR036638 GO:0046983
Vian3g00021 348 MobiDBLite consensus disorder prediction 1 71 - -
Vian3g00021 348 CDD bHLH_AtbHLH_like 237 287 IPR045239 -
Vian3g00021 348 Gene3D - 229 291 IPR036638 GO:0046983
Vian3g00021 348 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 330 - -
Vian3g00021 348 MobiDBLite consensus disorder prediction 162 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00021 Vian-Chr3 171042 173069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00021 82 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 55.000 2.59e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g00021 HLH 5.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00021 - - vra:106771988 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00021 3 171042 173069 Vian3g00021 3 171042 173069 ECH
Vian2g01983 2 39448992 39451467 Vian3g00021 3 171042 173069 ECH
Vian3g02504 3 38997240 38999873 Vian3g00021 3 171042 173069 ECH