Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00003 ATGGCTTTAGAGCAGGAATTGTCCCTGGGTCAGAATACGAATACGAATTCGAATAGGAATCCGAACCCAGTTGATTGCGTGGATGTTCGGGGTGAGGGTGGAGACGAGGGAGGGAAAGCGCCGAGACTGCCTCGGTGGACGAGGCAAGAAATTCTGGTTCTGATACAGGGAAAGAGAGACGCTGAAAACAAGTTCAGGAGGGGCCGAACGGCCGGATTGCCATTAGGGTCGGGTCAGGTGGAGCCCAAATGGGCATCGGTCTCTTCCTACTGCAGAAAGCATGGAGTCAACAGAGGTCCGGTTCAGTGCCGGAAAAGGTGGAGCAATTTGGCCGGAGACTACAAGAAGATCAAAGAATGGGAATCTCAGATAAGAGAGGAGTCGGATTCCTTTTGGGTCATGAGAAACGATTTAAGGAGAGACCGGAAATTGCCCGGATTTTTTGACAAGGAAGTTTATGATATTCTCGATTCAGGCTCCCAAGGTCCGGCGTTGGCTCTCGCTCTTTCATCGCCTCCTTCAATGACAGTAACGGTGTGCAAGGACATGCGCATGGACATGGACACCAAAAGAGGGTATGCACCTGCCCCTTCCTCAGCCTCAGCCCCTGCCCCTGCCTCTGCCCCTGCTGAGCCTGAGGAGCCTCACCTCTACGATAGTAATCGGAGCGTCCCTGTTGAGGATGGTTTGTTTTCAGATTTCGAACAAGATGAAGTCTCTGCCAGTCCCGAGAAGAAGGACATTTTTCCGCCCTCCAACAGGGACTTCCCTGCTCCCATTCCTATATCAGACCAACTTGTATCAATTGGGAAGTTAACTGACAAATTTCAGGAGGCTGCACATGTTCTAAAGTGGTGGAATTTGACGCTTGATGGTGAAGATGGACCCGATACCACTGCTTTTGTTTCTGCTGCTGTTTCTGATTCCTGCAACAGCCTTAGAATAGAGTTGATTGGTGTGACTAACGAGAAACAGTCTACTCCAAATCCAGAAATGGGTTCTACCTCTCAAGGAGAGCGGAAAAGGAAGCGATTATCAACTGACGGAGGGGAGGAAACTTTGCAAATTCATTTAATTGATGTCTTAGAAAGAAATGGCAAGATGCTAAGTGCTCAACTTGAAGCGCAGAATATAAATTTCCAGTTGGATCGTGAGCAGCGGAAAATCAATGGTAGTAATTTGGTTGCCGTGCTTGATAAGCTTGCAGATGCTTTAGGGAGAATCGCTGATAAATTATAG 1239 0.4851 MALEQELSLGQNTNTNSNRNPNPVDCVDVRGEGGDEGGKAPRLPRWTRQEILVLIQGKRDAENKFRRGRTAGLPLGSGQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREESDSFWVMRNDLRRDRKLPGFFDKEVYDILDSGSQGPALALALSSPPSMTVTVCKDMRMDMDTKRGYAPAPSSASAPAPASAPAEPEEPHLYDSNRSVPVEDGLFSDFEQDEVSASPEKKDIFPPSNRDFPAPIPISDQLVSIGKLTDKFQEAAHVLKWWNLTLDGEDGPDTTAFVSAAVSDSCNSLRIELIGVTNEKQSTPNPEMGSTSQGERKRKRLSTDGGEETLQIHLIDVLERNGKMLSAQLEAQNINFQLDREQRKINGSNLVAVLDKLADALGRIADKL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00003 412 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 22 412 - -
Vian3g00003 412 MobiDBLite consensus disorder prediction 321 335 - -
Vian3g00003 412 MobiDBLite consensus disorder prediction 189 222 - -
Vian3g00003 412 MobiDBLite consensus disorder prediction 1 42 - -
Vian3g00003 412 MobiDBLite consensus disorder prediction 236 257 - -
Vian3g00003 412 Pfam Myb/SANT-like DNA-binding domain 45 134 IPR044822 -
Vian3g00003 412 MobiDBLite consensus disorder prediction 1 23 - -
Vian3g00003 412 MobiDBLite consensus disorder prediction 321 349 - -
Vian3g00003 412 ProSiteProfiles Myb-like domain profile. 45 111 IPR001005 -
Vian3g00003 412 Gene3D - 46 116 - -
Vian3g00003 412 CDD GT1 44 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00003 Vian-Chr3 14780 19140 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00003 24 119 Trihelix Transcription Factor Family AT1G76890 26.042 5.12e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian3g00003 Myb_DNA-bind_4 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00003 - - gmx:100797767 452.595