Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03252 ATGGGGGAGATAGAGAGAGAGGGAGTGTTGTCGAGGGAGAAGGTAGAAGAGGAAGAAGAAGCGGAAGCCTCGGTGGAGATATGGAAGTACATATTTGGATTTGTGGAAATGGCAGTGGTGAAATGTGCGATAGAGCTTGGCATTGCTGAAGCCATAGAAAAGCATGGAAGGGCGATGACAGTGTCGGAGATATCATCAGCTCTGGGGTGTGATCCTGCTCTTCTGAAACGCATAATGAGATTCCTGGCGCACAGGAAGATATTCAAAGCCGTAACCATGGGCGGCAGCAATGGCTATACACAGACACCTCTGTCTCGTCGTTTGATGAAAGAGGGGCAACAGAGCATGGCCGCTTTACTTTTGCTGGAGAGTACTCCTATAATGCTAGCACCTTGGCACAGTCTAAGCGCTCGCGTCATGGCCAATGGCCGTCCCTCATTTCAAAACACTCACGGCGAAGACGTGTGGCGCTATGCCGCCGCCAATCTCGACCACAGCAACCTCATCAACGAAGCGATGGCATGCGATGCCAAGCTTGTCATGCCTGTCATCATCGAAAATTGCAACGAGGAATTCCGTGGTCTCAAGTCGGTGGTGGACGTGGGAGGGGGCAACGGCACTGCCATGCGCATCCTCCATCAAGCTCTCCCTTCCATTCGAGCCATCAATTTTGATCTTCCCCATGTCATCGCCCAGGCCCCTCACTCCGATGGCCTCGAACACGGGGCAGGAGACATGTTCCAGAGTGTTCCTAAAGCCGATGCTGCTTTTCTCATGTGGGTTTTGCACGACTGGTCGGACGAAGAGTGCATCGAAATCTTGAAGAAGTGTAGGGAAGCAATCTCGAAGGAAAATGGGAAGGTGATGATCGTGGAGGCGGTGATAGAAGAAGGAGAAGAAGGTAAGGTGAAGGCCCTGGAAGACGTGGGGCTGATGCTGGACATGGTGATGATGGCTCACACTAACTTTGGGAAAGAGCGGACCCTGAAAGAGTGGGAATATGTTATCAAAATGGCAGGCTTTAGCTCATACACTGTCAAACCCATTCCCGCAGTGCAGTCTGTGATTCTGGCTTTCTACTGA 1083 0.5162 MGEIEREGVLSREKVEEEEEAEASVEIWKYIFGFVEMAVVKCAIELGIAEAIEKHGRAMTVSEISSALGCDPALLKRIMRFLAHRKIFKAVTMGGSNGYTQTPLSRRLMKEGQQSMAALLLLESTPIMLAPWHSLSARVMANGRPSFQNTHGEDVWRYAAANLDHSNLINEAMACDAKLVMPVIIENCNEEFRGLKSVVDVGGGNGTAMRILHQALPSIRAINFDLPHVIAQAPHSDGLEHGAGDMFQSVPKADAAFLMWVLHDWSDEECIEILKKCREAISKENGKVMIVEAVIEEGEEGKVKALEDVGLMLDMVMMAHTNFGKERTLKEWEYVIKMAGFSSYTVKPIPAVQSVILAFY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03252 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 357 IPR029063 -
Vian2g03252 360 Gene3D Vaccinia Virus protein VP39 109 359 IPR029063 -
Vian2g03252 360 PIRSF O-mtase 7 360 IPR016461 GO:0008168
Vian2g03252 360 Pfam O-methyltransferase domain 132 342 IPR001077 GO:0008171
Vian2g03252 360 Pfam Dimerisation domain 39 83 IPR012967 GO:0046983
Vian2g03252 360 PANTHER O-METHYLTRANSFERASE 37 343 IPR016461 GO:0008168
Vian2g03252 360 FunFam O-methyltransferase family protein 11 108 - -
Vian2g03252 360 Gene3D - 10 108 IPR036388 -
Vian2g03252 360 SUPERFAMILY "Winged helix" DNA-binding domain 17 111 IPR036390 -
Vian2g03252 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 360 IPR016461 GO:0008168
Vian2g03252 360 CDD AdoMet_MTases 198 291 - -
Vian2g03252 360 FunFam O-methyltransferase family protein 110 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03252 Vian-Chr2 52768020 52769174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03252 40 346 Monolignol Biosynthesis Gene Families AT5G54160 35.962 3.41e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03252 K22588 - gmx:100782951 528.48