Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03249 ATGCCAACATCGTGGGCTGATTTGGCTGCGAATTCCGCCTCTGAAAATGCGGGAACATCCAACTCCACAGCTCCGACGCGGCCTGTTTATGTGCCTCCGCATCTGAGGAACCGTGCAGCATCAGCATCAGCATCAACGGAATCCCCCCCTGCTCCGCCCAATGTGAGTTCTAATAATAATGTCGGATCACGGTGGGGTGCGCCCAGAAACGGTTGGGGGAACAGAACCGGTGTTTGGGATCGGCGGGAAGTGAACCCCTTCGAAGATCAGGAGGATGCAGCTGAAGAGGGAGCAGCAGCTTCTGGCGAGGAGCAGGGAAACATGGGAATTAATTTTGATGCTTACGAGGACATTCCCGTTGAGACGACCGGTGAAAACGTGCCCCCACCTGTGAATACTTTTGCGGAGATTGACTTGGGCGATGCTCTTAATCAGAACATTAGACGCTGCAAATATGTTAAACCAACGCCGGTCCAGCGGCATGCCATACCCATATCCCTTGGCGGACGGGATTTGATGGCTTGTGCGCAGACTGGTTCCGGAAAGACTGCAGCATTCTGTTTCCCTATTATCAGTGGCATTATGAGAGGTCAAGGGCAGGCCCCCCTGCGGCCCCCTCGCGGTGCCCGTACAGTCTATCCACTTGCCCTTGTTCTCTCGCCGACTAGGGAGTTATCCGTGCAAATACTTGAAGAGGCTAGGAAGTTTTCATACCAGACAGGGGTCAGGGTCGTTGTTGCCTATGGTGGAGCTCCTATAAACCAGCAGCTACGGGAACTTGAGAGAGGGGTGGACATTCTTGTTGCAACTCCAGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAAATATTTGGCCTTAGATGAGGCAGATAGGATGCTGGACATGGGTTTTGAACCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAGAGAGATACAGAGACTGGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGGCCGTTGGAAGAGTGGGCTCAAGTACAGATTTGATTGTCCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGATCTTCTTCATGCGCAGAGGGCAAATGGGGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTCGAGCATTGGTTGTGTCGTAATGGTTTTCCAGCAACTACTATTCACGGTGACAGGTCACAACAGGAAAGAGAATTGGCATTAAGATCATTTAAAACTGGCAACACCCCCATTTTGGTTGCAACTGATGTGGCTGCACGCGGGCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACGTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGAACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCGTTCTTTAATGACAACAATGCATCACTAGCTAGGCCTTTAGCAGATCTGATGCAAGAAGCGAATCAAGAAGTACCTGATTGGCTCTCACGGTATGCTGCTCGCTCTTCTATTGGTGGTGGACGGAACCGTCGAACAGGAGGAAGCCGATTTGGTGGCCGTGACTTTCGAAGAGAAGGTTCTTTTAGTAGGGGTGGTTCTGATTACTACAGTACAGGAAACAACAGTGGTGGATATGGCAATTCTGGTGGTTATGGTGGAGGATATGGTCCTGGGGTAACTAGTGCTTGGGACTGA 1782 0.4927 MPTSWADLAANSASENAGTSNSTAPTRPVYVPPHLRNRAASASASTESPPAPPNVSSNNNVGSRWGAPRNGWGNRTGVWDRREVNPFEDQEDAAEEGAAASGEEQGNMGINFDAYEDIPVETTGENVPPPVNTFAEIDLGDALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQGQAPLRPPRGARTVYPLALVLSPTRELSVQILEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPREIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNGFPATTIHGDRSQQERELALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFDVPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARPLADLMQEANQEVPDWLSRYAARSSIGGGRNRRTGGSRFGGRDFRREGSFSRGGSDYYSTGNNSGGYGNSGGYGGGYGPGVTSAWD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03249 593 CDD SF2_C_DEAD 362 498 - -
Vian2g03249 593 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 528 IPR001650 -
Vian2g03249 593 SMART ultradead3 151 365 IPR014001 -
Vian2g03249 593 Pfam Helicase conserved C-terminal domain 374 489 IPR001650 -
Vian2g03249 593 SMART helicmild6 408 489 IPR001650 -
Vian2g03249 593 MobiDBLite consensus disorder prediction 1 27 - -
Vian2g03249 593 MobiDBLite consensus disorder prediction 543 557 - -
Vian2g03249 593 MobiDBLite consensus disorder prediction 1 78 - -
Vian2g03249 593 Gene3D - 87 352 IPR027417 -
Vian2g03249 593 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 132 160 IPR014014 GO:0003724
Vian2g03249 593 MobiDBLite consensus disorder prediction 533 566 - -
Vian2g03249 593 MobiDBLite consensus disorder prediction 39 65 - -
Vian2g03249 593 FunFam Probable ATP-dependent RNA helicase DDX4 95 352 - -
Vian2g03249 593 MobiDBLite consensus disorder prediction 574 593 - -
Vian2g03249 593 CDD DEADc_DDX3_DDX4 133 356 IPR044763 GO:0003724|GO:0005524
Vian2g03249 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 504 IPR027417 -
Vian2g03249 593 Gene3D - 353 532 IPR027417 -
Vian2g03249 593 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 350 IPR014001 -
Vian2g03249 593 FunFam ATP-dependent RNA helicase RhlB 353 532 - -
Vian2g03249 593 MobiDBLite consensus disorder prediction 88 107 - -
Vian2g03249 593 Pfam DEAD/DEAH box helicase 156 339 IPR011545 GO:0003676|GO:0005524
Vian2g03249 593 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 96 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03249 Vian-Chr2 52743441 52748979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03249 130 521 Eukaryotic Initiation Factors Gene Family AT3G19760 31.298 5.50e-61 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03249 K11594 - gmx:100781668 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03249 2 52743441 52748979 Vian2g03249 2 52743441 52748979 ECH