Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03238 ATGGCGTTTTCTACTACGGTTGGAAATGTCTTGAGGCAGGGTGCTGCTCGCAGCACACAAGCACCTGTTGCATCCATGCTTAATTATATTCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCGTACGGAGTTGATGACCAGTCTCTTAAGGACGCATTTGCTAGTTTTGGAGACGTGGTTGAGGGTGAGTTCGGCTTCTTTCGTTATTGTTATCTTGTGGTCCCATTTAGCAATGGATTCACCTCAAGGGTTATAACTGATAGAGACACCGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCAGTGATGAGTCTGCAACTACGGCACTGTCTGCAATGGACGGGCAGGATCTAAATGGGCGAAACATTAGGGTATCTTATGCAACTGATAGATCTTCTGGACCACGACCTGGTGGTGGTGGTGGTGGTTTTGGTGGTGGTGGTTATGCACCTCGTAATGGCGGTGGTGGTTGGTGA 489 0.4785 MAFSTTVGNVLRQGAARSTQAPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFASFGDVVEGEFGFFRYCYLVVPFSNGFTSRVITDRDTGRSRGFGFVNFSSDESATTALSAMDGQDLNGRNIRVSYATDRSSGPRPGGGGGGFGGGGYAPRNGGGGW 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03238 162 Gene3D - 29 162 IPR012677 -
Vian2g03238 162 MobiDBLite consensus disorder prediction 132 162 - -
Vian2g03238 162 SUPERFAMILY RNA-binding domain, RBD 33 161 IPR035979 GO:0003676
Vian2g03238 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 128 IPR000504 GO:0003723
Vian2g03238 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 64 IPR000504 GO:0003723
Vian2g03238 162 PANTHER GEO13361P1-RELATED 24 156 - -
Vian2g03238 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 134 IPR000504 GO:0003723
Vian2g03238 162 CDD RRM2_NsCP33_like 37 132 - -
Vian2g03238 162 SMART rrm1_1 37 130 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03238 Vian-Chr2 52650324 52651442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03238 35 144 Eukaryotic Initiation Factors Gene Family AT4G34110 32.727 4.82e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03238 - - gmx:100499841 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03238 2 52650324 52651442 Vian2g03238 2 52650324 52651442 ECH