Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03224 ATGGCCACTTCCAGATTAAAACGGAAAACCCTACATTCTCTCGGTCAGCTCTTTCTTCTCTTTTTCACTCTCTCTTCCACCGCCATTGCCGACGATGCCGCGTTCATGTCCAAGCTCGCCAAAGCCTTGAGTCCCACGCCGTCCGGGTGGTCGGGGACCAGCTTCTGTCAGTGGAATGGCGTAAGGTGCACCACCAACCGCGTCACTTCAATCAAAATCGCTTCACAGTCGCTCACCGGAACGCTACCTCCGGATCTCAACTCCCTCTCCCAACTCACCTCGCTCTCTCTCCAGGGCAACGCGCTCTCCGGCGCGTTGCCTTCCCTTGCTAACCTCTCCATGCTGGAAACCGTGTTCCTCGGAGGCAACAACTTCACCTCCATTCCCGATGGTTGCTTCCAGGGTCTCACTAGCTTACAGAGCCTCAGCTTGGCAGACAGCTTCAACCTCGCTCCATGGAGGATTCCCGCCGAGTTGACTCAGTCCACCAACCTCGTCAAACTCGACCTCGGAAACACAAACCTCATTGGTACCTTGCCAGACGTGTTTGACTCCCTTCTGAGTTTGCAGGAACTTCGTCTTTCTTACAACAACCTCACTGGGGGTTTGCCAAAGACCTTCGCGGGATCTGGGATCCAGAATCTGTGGCTCAACAATCAGCAAGACGGGTTCGGGTTTTCGGGTACCATTGACGTGCTTGCTTCCATGACCCATTTGTCTCAGGTTTGGTTTCAGAAGAACCTTTTCACGGGTCCCATTCCGAATTTGTCAAATTGCACCGCATTGTTTGATCTGCAGCTGAGAGACAACCAGTTAACCGGTGTGGTTCCACCTTCTCTCATGTCCCTTTCTAGTTTGCAGAACGTTTCTTTAGACAACAATGTGCTTCAGGGTCCATTTCCTTCGTTTGGGAAAGGTGTGAAGGTCACTCTTGATGGGGTGAATAGTTTTTGTAGGAAAGACTCTGGACCTTGCGATTCTCGCGTAACGACTTTGCTTGATATTGCTAAAGATTTCGCCTATCCCCTTCAGTTGGCCCGTTCCTGGTCCGGGAATGATCCTTGTGGAGATTGGAGTTTTGTTGTGTGTGCTACTACGGGGAAGATTGTTACTATGAATTTGGCAAAGCAAAATTTGACGGGAACTATTTCACCTGCATTTGCCAATTTAACTGATTTGAGAAACCTGTATCTCAATGACAATCATTTAGGAGGATCAATACCTGGAGACTTGGTTAATTTAGCTCAGCTTGAGATTCTAGATGTGTCTAATAACAATCTATCTGGTGATGTTCCAAAGTTCCCAACCAAGGTGAAGTTCAATAATGCAGGTAATCCTCTGCTTGGGCATTCTGGAGGTGGTGGTAGCGGTGGAACTACTCCGTCAAGCGGTTCTGGTGGCGCACCAAGTGGAAGTCCAAATGCAACGTCAGGCGGTTCTGCACTCTCTCCTGCTTGGATCGGAGGTATTGTAGTTATTGCAGTGTTTTTTGTTGCGGTGGTCGTATTTGTCTTTTGCAAGTGTCAAGCTAAAAACCGTCACGGCAAGTTTGGGAGGGTTAATAATCCCGAAAATGGGAAAGGAGAGGTTAAGATTGATATGATGAGCGTTACAAATTCCAATGGATATGGTGGCGTTCCGAGCGAGTTGCATAGCCAGGGCAGTGAGCGTAGTGATATTCATGTTTTTGAGGGTGGGAATGCTACTATTTCAATTCAGGTTCTTCGGCAAGTAACGGATAATTTTAGTGAGGAAAACATTTTAGGTAGGGGAGGGTTTGGGGTTGTTTATAAAGGGGAATTGCACGATGGAAGTAAAATTGCCGTGAAGAGAATGGAATCTGTTGCAACCGGGAGCAAGGGATTGAATGAGTTCCAAGCAGAGATTGCAGTTCTCAGTAAAGTCAGACACAGACATTTAGTTGCTCTTTTAGGATATTGCATAAACGGCAACGAAAGGCTTTTGGTGTATGAGTATATGCCTCAAGGGACGCTAACACAACACCTGTTTGATTGGCGTGAAAATGGATGTGCTCCTTTGACTTGGAAACAAAGGATAGCAATAGCTTTGGATGTAGCTCGGGGAGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCATAGGGACTTGAAACCCTCGAACATATTATTGGGTGATGACATGAGAGCTAAGGTTGCAGATTTTGGTTTGGTAAAAAATGCACCAGATGGGAAATATTCTGTCGAGACAAAGTTGGCTGGAACATTTGGATATTTGGCACCTGAATATGCAGCTACCGGAAGAGTGACTACCAAAGTAGACGTGTACGCATTTGGAGTAGTTTTGATGGAACTGATCACAGGTAGAAGGGCATTGGACGATACTGTGCCTGATGAAAGGTCTCACCTGGTTTCCTGGTTCCGTAGGGTACTGATTAACAAGGAGAACATCCCCAAGGCTATTGATCAAACTCTCGATCCTGATGAGGAAACCATGGAAAGCATATATAAAGTGGCTGAACTGGCAGGTCATTGCACTGCTCGTGAACCGTATCAAAGGCCTGATATGGGTCATGCGGTGAATGTCTTGGTTCCTCTCGTAGAGCAATGGAAGCCTACCAGCCACGAAGAAGAAGAAGGTTATGGCATTGACATTCACATGAGCCTTCCTCAAGCTCTGCAAAGATGGCAAGCTAACGAAGGCACTTCCACAATGTTTGACATGTCCATCTCACAAACTCAATCAAGCATTCCTGCAAAACCTTCAGGATTTGCCGACTCTTTTGATTCGATGGATTGCCGATGA 2790 0.471 MATSRLKRKTLHSLGQLFLLFFTLSSTAIADDAAFMSKLAKALSPTPSGWSGTSFCQWNGVRCTTNRVTSIKIASQSLTGTLPPDLNSLSQLTSLSLQGNALSGALPSLANLSMLETVFLGGNNFTSIPDGCFQGLTSLQSLSLADSFNLAPWRIPAELTQSTNLVKLDLGNTNLIGTLPDVFDSLLSLQELRLSYNNLTGGLPKTFAGSGIQNLWLNNQQDGFGFSGTIDVLASMTHLSQVWFQKNLFTGPIPNLSNCTALFDLQLRDNQLTGVVPPSLMSLSSLQNVSLDNNVLQGPFPSFGKGVKVTLDGVNSFCRKDSGPCDSRVTTLLDIAKDFAYPLQLARSWSGNDPCGDWSFVVCATTGKIVTMNLAKQNLTGTISPAFANLTDLRNLYLNDNHLGGSIPGDLVNLAQLEILDVSNNNLSGDVPKFPTKVKFNNAGNPLLGHSGGGGSGGTTPSSGSGGAPSGSPNATSGGSALSPAWIGGIVVIAVFFVAVVVFVFCKCQAKNRHGKFGRVNNPENGKGEVKIDMMSVTNSNGYGGVPSELHSQGSERSDIHVFEGGNATISIQVLRQVTDNFSEENILGRGGFGVVYKGELHDGSKIAVKRMESVATGSKGLNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDWRENGCAPLTWKQRIAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETKLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTVPDERSHLVSWFRRVLINKENIPKAIDQTLDPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEEGYGIDIHMSLPQALQRWQANEGTSTMFDMSISQTQSSIPAKPSGFADSFDSMDCR 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03224 929 Pfam Leucine rich repeat N-terminal domain 329 363 IPR013210 -
Vian2g03224 929 Pfam Leucine rich repeat N-terminal domain 31 63 IPR013210 -
Vian2g03224 929 FunFam Receptor-like kinase TMK4 30 323 - -
Vian2g03224 929 Gene3D Phosphorylase Kinase; domain 1 546 659 - -
Vian2g03224 929 PANTHER OSJNBA0070M12.3 PROTEIN 17 929 - -
Vian2g03224 929 Pfam Leucine rich repeat 371 427 IPR001611 GO:0005515
Vian2g03224 929 Pfam Leucine rich repeat 90 145 IPR001611 GO:0005515
Vian2g03224 929 SMART LRR_typ_2 390 414 IPR003591 -
Vian2g03224 929 SMART LRR_typ_2 112 135 IPR003591 -
Vian2g03224 929 SMART LRR_typ_2 186 209 IPR003591 -
Vian2g03224 929 SMART LRR_typ_2 89 111 IPR003591 -
Vian2g03224 929 MobiDBLite consensus disorder prediction 908 929 - -
Vian2g03224 929 Gene3D Transferase(Phosphotransferase) domain 1 660 882 - -
Vian2g03224 929 SUPERFAMILY L domain-like 29 434 - -
Vian2g03224 929 FunFam receptor protein kinase TMK1 546 659 - -
Vian2g03224 929 ProSitePatterns Protein kinases ATP-binding region signature. 588 610 IPR017441 GO:0005524
Vian2g03224 929 Pfam Leucine Rich Repeat 188 208 IPR001611 GO:0005515
Vian2g03224 929 Gene3D Ribonuclease Inhibitor 326 451 IPR032675 -
Vian2g03224 929 ProSiteProfiles Protein kinase domain profile. 582 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g03224 929 CDD STKc_IRAK 588 861 - -
Vian2g03224 929 FunFam Leucine-rich repeat receptor-like kinase 327 451 - -
Vian2g03224 929 SMART serkin_6 582 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g03224 929 MobiDBLite consensus disorder prediction 455 478 - -
Vian2g03224 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 707 719 IPR008271 GO:0004672|GO:0006468
Vian2g03224 929 SUPERFAMILY Protein kinase-like (PK-like) 559 858 IPR011009 -
Vian2g03224 929 Gene3D Ribonuclease Inhibitor 31 323 IPR032675 -
Vian2g03224 929 Pfam Protein tyrosine and serine/threonine kinase 585 856 IPR001245 GO:0004672|GO:0006468
Vian2g03224 929 MobiDBLite consensus disorder prediction 449 478 - -
Vian2g03224 929 FunFam receptor protein kinase TMK1 660 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03224 Vian-Chr2 52550617 52553988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03224 68 858 Receptor kinase-like Gene Family AT5G07280 32.927 4.41e-98 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vian2g03224 PK_Tyr_Ser-Thr 8.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03224 - - gmx:100781851 1578.92