Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03217 ATGCACTTCCTCACTGCACCGTTACCTTCGCTGCTCGCTCCCCTTTTGACCTCTTCCTTCCCCACCTCATTCTACTTCTCCTGCTCGACCGGTTGGGTGCTCCGATTCGCGTTTCATCGTTTAGAGAACAAGGGTGACATCAAGTCAAATGAACCTTATCGTTGTCGGGTTTGTGGGAGAAAGTTTTATACTAATGACAAGCATGTCAACCATTTCAAGCAACTGCATGGGAACAGGAAGTATAAGAAGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTATTCTCACTCCCAGAGTGGGGTATGGTTTGGCAGATGAGCTCAAACGGGCTGGGGGTTCAAACTGTGAGGCAAGGCTGCGATGTCTGAAGACGATTGTCGTTGGGGATATTGATGATGGTGTCTTGAAGAGGACTGTGAAACAATTGAAGGATTACATGACAATGAGAGAAATTAAGGACAAAGTCTATGAAAGTGGAAGTTTGGAGTTTGAGATGGGAAAGACGGAGAGGGAAGTATGCTTATATGATATGTATGTAAAGGAAGCATGCTATTGCCACCAATGTGCCTTGATTAATGTGACCTTTTGTCTATGA 624 0.4439 MHFLTAPLPSLLAPLLTSSFPTSFYFSCSTGWVLRFAFHRLENKGDIKSNEPYRCRVCGRKFYTNDKHVNHFKQLHGNRKYKKVKLVAKYSMKMEKYKKAASAILTPRVGYGLADELKRAGGSNCEARLRCLKTIVVGDIDDGVLKRTVKQLKDYMTMREIKDKVYESGSLEFEMGKTEREVCLYDMYVKEACYCHQCALINVTFCL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03217 207 ProSitePatterns Zinc finger C2H2 type domain signature. 55 76 IPR013087 -
Vian2g03217 207 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 38 121 - -
Vian2g03217 207 SUPERFAMILY beta-beta-alpha zinc fingers 49 77 IPR036236 -
Vian2g03217 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 81 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03217 Vian-Chr2 52494863 52495669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03217 35 149 C2H2 Transcription Factor Family AT4G12240 40.588 1.24e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g03217 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03217 - - gmx:100785257 150.984