Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03206 ATGGGGTATGACCGTCATCCAGGTCAACACCAAGGCGATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACATTACAAATGGGCATGCTGAAAACGCTAGAGAGGTATCAGAAATGTAACTATGGAGCGCCCGAGGCCAATGCGTCAACAAAGGAAGCCTTGGTATTGCTCGCCAAAGCCTTGAGTCCCACGCCGTCGGGGTGGTCGGCGACCAGCTTCTGTCAGTGGAAGGGCATCAGGTGCACCACCAACCGCCTCACCTCAATCAACATCGCTTCACAGTCGCTCAGCGGAACGCTACCTCCGGATCTCAACTCCCTCTCCCAACTCACCTCTCTCTCCAGGGCAACGCGCTCCCATTGCCAACCTCTCCATGCTGGAAATCGTGTTCTTCGGGGGCAACAACTTCACCTCCATTCCCCACGGTTGCTTCGAGGGTCTCACTGGCTTACAGAGTCTCGGCATGACAGACAGTTTCAACCTCGCTCTATGGGCGATTCCCACCGGATTGACTTAGTCCTCTAA 525 0.5486 MGYDRHPGQHQGDALFQPLECEPTLQMGMLKTLERYQKCNYGAPEANASTKEALVLLAKALSPTPSGWSATSFCQWKGIRCTTNRLTSINIASQSLSGTLPPDLNSLSQLTSLSRATRSHCQPLHAGNRVLRGQQLHLHSPRLLRGSHWLTESRHDRQFQPRSMGDSHRIDLVL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03206 174 Pfam Leucine rich repeat N-terminal domain 51 81 IPR013210 -
Vian2g03206 174 Gene3D Ribonuclease Inhibitor 49 145 IPR032675 -
Vian2g03206 174 SUPERFAMILY L domain-like 67 114 - -
Vian2g03206 174 PANTHER OSJNBA0070M12.3 PROTEIN 47 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03206 Vian-Chr2 52422260 52423803 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03206 29 56 MADS-box Gene Family AT1G24260 71.429 7.65e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03206 - - var:108319010 362.073