Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03202 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGAAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGCGATGCCGAGCTTGCTCTCATCATCTTCTCCACTAGAGGAAAGTTGTACGAGTTTTGCAGCACTTCAAGCATGCTGAAAACGCTAGAGAGGTATCAGAAATGTAACTATGGAGCGCCCGAGGCCAATGCGTCAACAAAAGAAGCCTTGGTATTGGAGTTAAGCAGTCAACAAGAATATTTGAAGCTGAAAGCACGGTACGAAGCTCTACAACGTTTTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAATGAGCTTGAATCACTTGAAAGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAACAAGGACCCAATTCATGCTGGATCAGCTTTCTGATAGTCAGCGCAAGGAACACTTGCTAGGTGAGGCAAACACAGCTCTCAGACAAAGGCAGTTGGAAGAATATCAAATAAATCAATTTCAACTGAATCCCAGTGGTGAAGAAATGGGGTATGACCGTCATCCAGGTCAACAACACCAAGGAGATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACATTACAAATGGGATATCGACCTGATCCAGTATCAGTGATAACAGGAGGCCAGAGCATGAACAATTTCATGGGAGGATGGTTACCATGA 738 0.4444 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCSTSSMLKTLERYQKCNYGAPEANASTKEALVLELSSQQEYLKLKARYEALQRFQRNLMGEDLGPLSSNELESLERQLDSSLKQIRSTRTQFMLDQLSDSQRKEHLLGEANTALRQRQLEEYQINQFQLNPSGEEMGYDRHPGQQHQGDALFQPLECEPTLQMGYRPDPVSVITGGQSMNNFMGGWLP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03202 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vian2g03202 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian2g03202 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Vian2g03202 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian2g03202 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian2g03202 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian2g03202 245 Coils Coil 128 148 - -
Vian2g03202 245 ProSiteProfiles K-box domain profile. 91 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian2g03202 245 Pfam K-box region 94 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian2g03202 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian2g03202 245 FunFam MADS-box transcription factor 1 13 87 - -
Vian2g03202 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian2g03202 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian2g03202 245 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Vian2g03202 245 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03202 Vian-Chr2 52403258 52406694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03202 1 245 MADS-box Gene Family AT1G24260 68.800 3.45e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian2g03202 K-box 5.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03202 - - gmx:100778931 418.698