Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03199 ATGTTTGGTGATGTTGAAGTTCCTGCTAAGATTATTCAGGATGGCGTAATCAGTTGTGAAACTCCTTCCAATCTTCTTGGAAAGGTTAAGTTGTGCATTACTTCCGGAAATAGGGTGCCTTGCAGTGAAGTGATTGAGTTTGAGTTTCGAAATAAGGCTACTAGTTGCACTCGCTGTAATTCATTAGAAACAGAAGATGGCAGAAGTCCAGAAGATCTGCTATTACTTGTTCGATTTGCTGAGATGCTCCACTCTTCAACTAAAAAGGATGACAGCACAGAATCTGGAAGTCACCTTTCAACAGAACAGAAAGATGGTGATGATTTATGGATTGACACTCTTCTAGTTGGCAGTGGAAAATCATCTGATACTGTTAAGTGGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTCTCTAACCGATCCTATGAAAGAGATGAAGGGACAGACTGTTCTTTGTCCAAGAAAGAGCAGGGAATTATACACATGATTTCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCCATTCTCAGTTGCGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACAGCCCTACATTGGGCTGCAAAGTTTGGGAGGGAAAAAATGGTTGCTTCACTTGTAGCTTCTGGTGCATCTGCTGAAGCGGTGACAGATCCAAGTTCACAAAATCCAAGCGGTGAAACTGCTGCATCTGTTGCAGCCTCCCATGGCCATAAGGGACTGGCAGGTTATCTTTCTGAGGTACACCTAACAAGCCACTTGTCATCCCTCACTTTGACAGCGAGTAAGATTTCTGAAGGAGCTTCTGAGCTCGAAGCCGAGTTAACTGTCAGCAATGTCTCTGAAGAAAATATCGTGGCCAGTGAGGATCAGGTTTCACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCAACTCAGGCAGCTGCACGGATACAAGATGCTTTTCGTGCACATTCTTTTAGAAAACGGAAAGCAAGAGAAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGCAGCATGTCTAGATGGATATTGTATTGATCCATGTTGCAACAATGATAACATGTCAGTGCTTTCTGCCATGTCAAAACTTAGTTCTCGGAGCTTGGGTGATTACAATTTAGCTGCCTTGTCGATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGAATTCTTAGCATTGCGCCAAAAAGTAGTTAAGATACAGGCCATTGTGAGGGGTTACCAGGCTCGGAAGCAATACAAGATACTATTATGGGCAGTTGGAATCCTGAATAAGGTTGTGCTACGATGGAGGAGAAAACGCGTTGGTATAACTAGTGTCCGGCAAGAAATGGATTCAAATGAAGAAGAAAGTGATGATGAAGATTTTCTCAACGTGTTCCGGAAAAAGAAAGTAAATGGAGCAATTCAGATGGCTTTGAAGCGGGTGCTTTCCATGGTCCGTCATGAGGATGCTCGCCACCAATACAGGCGCTTGCTTTCATTGTATCGTCAAGCCAAGACTGAACGTGACAGTACAAGTGATGAAGCACCGTCATCAACTTCAGAAGAGGACCCTCTCAATATGGAAGACGATGATTGGGATCTGTTATGGCAAAAATTATGTGCTTAG 1635 0.4404 MFGDVEVPAKIIQDGVISCETPSNLLGKVKLCITSGNRVPCSEVIEFEFRNKATSCTRCNSLETEDGRSPEDLLLLVRFAEMLHSSTKKDDSTESGSHLSTEQKDGDDLWIDTLLVGSGKSSDTVKWLLEELLKDKLQLWLSNRSYERDEGTDCSLSKKEQGIIHMISGLGFEWALNPILSCGVNINFRDINGWTALHWAAKFGREKMVASLVASGASAEAVTDPSSQNPSGETAASVAASHGHKGLAGYLSEVHLTSHLSSLTLTASKISEGASELEAELTVSNVSEENIVASEDQVSLKASLDAVRNATQAAARIQDAFRAHSFRKRKAREAAAAAAAAAAAACLDGYCIDPCCNNDNMSVLSAMSKLSSRSLGDYNLAALSIQKKYRGWKGRKEFLALRQKVVKIQAIVRGYQARKQYKILLWAVGILNKVVLRWRRKRVGITSVRQEMDSNEEESDDEDFLNVFRKKKVNGAIQMALKRVLSMVRHEDARHQYRRLLSLYRQAKTERDSTSDEAPSSTSEEDPLNMEDDDWDLLWQKLCA 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03199 544 SMART ANK_2a 192 221 IPR002110 GO:0005515
Vian2g03199 544 SMART ANK_2a 231 260 IPR002110 GO:0005515
Vian2g03199 544 Gene3D - 61 257 IPR036770 -
Vian2g03199 544 ProSiteProfiles IQ motif profile. 310 339 IPR000048 GO:0005515
Vian2g03199 544 SUPERFAMILY E set domains 1 50 IPR014756 -
Vian2g03199 544 ProSiteProfiles IQ motif profile. 378 407 IPR000048 GO:0005515
Vian2g03199 544 Gene3D Immunoglobulins 1 55 IPR013783 -
Vian2g03199 544 ProSiteProfiles Ankyrin repeat profile. 192 224 IPR002110 GO:0005515
Vian2g03199 544 SMART iq_5 309 331 IPR000048 GO:0005515
Vian2g03199 544 SMART iq_5 400 422 IPR000048 GO:0005515
Vian2g03199 544 SMART iq_5 377 399 IPR000048 GO:0005515
Vian2g03199 544 Coils Coil 490 510 - -
Vian2g03199 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 428 IPR027417 -
Vian2g03199 544 Pfam IQ calmodulin-binding motif 403 422 IPR000048 GO:0005515
Vian2g03199 544 Pfam IQ calmodulin-binding motif 381 398 IPR000048 GO:0005515
Vian2g03199 544 ProSiteProfiles Ankyrin repeat region circular profile. 192 221 - -
Vian2g03199 544 Gene3D - 378 425 - -
Vian2g03199 544 MobiDBLite consensus disorder prediction 508 533 - -
Vian2g03199 544 SUPERFAMILY Ankyrin repeat 162 255 IPR036770 -
Vian2g03199 544 ProSiteProfiles IQ motif profile. 401 425 IPR000048 GO:0005515
Vian2g03199 544 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 510 - -
Vian2g03199 544 Pfam Ankyrin repeats (3 copies) 176 252 IPR002110 GO:0005515
Vian2g03199 544 FunFam Calmodulin-binding transcription activator 2 377 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03199 Vian-Chr2 52373561 52376579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03199 1 539 CAMTA Transcription Factor Family AT1G67310 55.941 2.05e-176 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03199 K21596 - gmx:100791430 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03199 2 52373561 52376579 Vian1g02656 1 39470606 39500902 PCT