Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03193 ATGGAGTGGAATGCAAAATCTCTCGGACAATGGGACTGGGAGCACTTATTCTTCTTCAATACAAAAGCAACAGAAAATCCGAGGTTACCAACAACTGATTGTAGCAACGAAGCAGATCGAGAAATCAATGTTGGGGTGTTTTATCCATCAGGTGGGAGTGCATGTTCTGGGTCTGAACTAGTACATGCTTCTTCACCAAGGAGCTCAAAATCAGCTTCCAATAATTCACTGTCAAATGAGGATAGCAAGGCATCGGTGTTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAACTGTGCCCAGTTGAAACTTCTCAATCAGCAGTTCCTTCTCCAGTCTCTGGTGAACCTTTGCTCACTCTGAAGCTTGGCAAACGGTTGTACTTTGAGGATGTATGCGCAGGAAGTGATTCCAAGAAAGCATCTTCCTTTGAGGTTCCAATTTCTTCAGGAAAGAAATATAAAACCAGTAATCAGAATTTGCAGCATCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTTTCATCTGCTAAAGATTACCATCGCAAACACAGAGTGTGTGAAGGTCATTCCAAATCCCCTAAGGTGCTTGTAGCTGGTTTGGAGCGCCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGAAAACGTCTCTCAGATCATAATGCAAGGCGTCGCAAACCACAGCCTGACTCAGTCCAATTAAATCCATCAGCGTTGTCTTCGTCGCCTTATGATGGGAGGCAAATGATGAGTCCGTTTGCATTTTCAAGAAGTGCTACAAACATGGGCTGGCAGAATTTGCATAGCAACAAGCTCCCCCAGACAAAAGATTTTCTTCCGAAGCCTGCAAAAGCCTTTGATAAGATACCCAGTATTGTATCCATGTTTTCTGATGATAACAGTGGTCTTCTAACATCCAGAAGTATAGCAGCGAAGACTATTGTTCCAGGTTTAGAAGATCCGAATTCCATTAGTTCGTGTGATCCAAATGGTGCACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAAGCAATTCATGGGGTCCATATGAGACTAAGTTCCTATCACTGGAACGCTCCTCTAGAACACAATCGATGACGCACCAGCAGCAGCGCTTACCACTTGCTTCCTCTTCGGAATATTGGCACACTGATCATCAACAACAACAACCTTCCCCTTCCACCATGAGCATGTGCATCTCATTCTCAGACTGTGATACCAACAATCGCTTTCAAGACTTTCAGCTGTTGAGTGCACCCTATGACTCGCCTTTTCCATGCAACCATCTGGATTGA 1344 0.4479 MEWNAKSLGQWDWEHLFFFNTKATENPRLPTTDCSNEADREINVGVFYPSGGSACSGSELVHASSPRSSKSASNNSLSNEDSKASVLTLEGSQDDSTGKKELCPVETSQSAVPSPVSGEPLLTLKLGKRLYFEDVCAGSDSKKASSFEVPISSGKKYKTSNQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCEGHSKSPKVLVAGLERRFCQQCSRFHALSEFDDKKRSCRKRLSDHNARRRKPQPDSVQLNPSALSSSPYDGRQMMSPFAFSRSATNMGWQNLHSNKLPQTKDFLPKPAKAFDKIPSIVSMFSDDNSGLLTSRSIAAKTIVPGLEDPNSISSCDPNGAQDVNRALSLLSSNSWGPYETKFLSLERSSRTQSMTHQQQRLPLASSSEYWHTDHQQQQPSPSTMSMCISFSDCDTNNRFQDFQLLSAPYDSPFPCNHLD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03193 447 SUPERFAMILY SBT domain 167 248 IPR036893 GO:0003677|GO:0005634
Vian2g03193 447 Pfam SBP domain 169 242 IPR004333 GO:0003677
Vian2g03193 447 MobiDBLite consensus disorder prediction 233 261 - -
Vian2g03193 447 MobiDBLite consensus disorder prediction 58 116 - -
Vian2g03193 447 Gene3D - 159 230 IPR036893 GO:0003677|GO:0005634
Vian2g03193 447 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 401 IPR044817 GO:0003677
Vian2g03193 447 FunFam Squamosa promoter-binding-like protein 14 160 230 - -
Vian2g03193 447 MobiDBLite consensus disorder prediction 58 93 - -
Vian2g03193 447 ProSiteProfiles Zinc finger SBP-type profile. 166 243 IPR004333 GO:0003677
Vian2g03193 447 MobiDBLite consensus disorder prediction 102 116 - -
Vian2g03193 447 MobiDBLite consensus disorder prediction 244 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03193 Vian-Chr2 52350124 52352486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03193 1 401 SBP-box Gene Family AT5G43270 38.173 6.77e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian2g03193 SBP 9.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03193 - - gmx:100796013 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03193 2 52350124 52352486 Vian2g03193 2 52350124 52352486 ECH