Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03180 ATGATTGCTATGGCGGAGGAAGAAGAGAACGGGGTGTCGATTGAACTCGAATTCCCGAAGAGTCGGGTTAAGAAGATCATGACGCTGGACAAGGATGTGAAGAGAGTGAGTTCAGAAGCGTTGTTCCTGGTGTCGCGCTCCACAGAGTTGTTCCTCCAATTTCTGGCTGAAAAATCTGCCAAAGTTGCTATTGAAAAGAAACGGAAGACCGTGAATCTGGAACACGTGAGAATGGCCGTTAAGAGGCACCAGCCAACCAGGGATTTTCTCCTCGATGATCTTCCGCCTCCGTCTGAGCCCGCCAAACCCGATGGGCCCGCCAAGCCCGTGGTTCGGCCCAAACTTGATGCTGCGCCGTCTGGTACTCGTCGCATCGATCAGTTTTTCCGAAAGCCAGAGCCTCAAAACCCATCCCAAGCTCAATCGCCTGAAAATCCAGCCCAAGCTCAATCGTCTGAAATTCCTGCCCAAGCTCAAGCGCCCGAAATACCTTCTCAAACTGAATCGCCTGAAGTTCCTTTTGAAACTCAATAG 534 0.5131 MIAMAEEEENGVSIELEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPDGPAKPVVRPKLDAAPSGTRRIDQFFRKPEPQNPSQAQSPENPAQAQSSEIPAQAQAPEIPSQTESPEVPFETQ 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03180 177 MobiDBLite consensus disorder prediction 84 177 - -
Vian2g03180 177 FunFam Nuclear factor Y, subunit C13 4 95 - -
Vian2g03180 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 17 80 IPR003958 -
Vian2g03180 177 SUPERFAMILY Histone-fold 15 83 IPR009072 GO:0046982
Vian2g03180 177 Gene3D Histone, subunit A 2 95 IPR009072 GO:0046982
Vian2g03180 177 MobiDBLite consensus disorder prediction 132 177 - -
Vian2g03180 177 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 8 145 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03180 7 138 CCAAT-HAP5 Transcription Factor Family AT5G43250 61.364 1.30e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vian2g03180 CBFD_NFYB_HMF 4.9e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03180 - - vun:114164970 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03180 2 52262903 52263436 Vian2g03180 2 52262903 52263436 ECH