LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g03177	ATGGTGAAGTACTCCAGAGAACCTGACAATCCCACCAAGTCTTGCAAGGCAAGGGGCGCCGACCTCAGAGTGCATTTCAAGAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAGAGATACTTGGAGGATGTGTTGGCCCACAAACAAGCCATCCCTTTCCGACGTTTCTGCCGTGGTGTTGGGAGGACGGCTCAGGCCAAAAACAGACACTCCAATGGACAAGGACGTTGGCCCGCCAAATCTGCTAAATTCATCCTGGATTTGCTGAAAAATGCCGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTAGATGCTCTTTATATTTCTCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGCACCTACCGAGCCCATGGAAGAATCAACCCTTACATGTCATCTCCCTGCCATATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTGAAGAAAGAGCCGGAGACACAATTGGCGACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGTGCTTCATCCTAA	546	0.4872	MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKGALRSGASS	181

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian2g03177	181	PANTHER	60S RIBOSOMAL PROTEIN L17	1	173	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Vian2g03177	181	Gene3D	Ribosomal protein L22/L17	1	180	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Vian2g03177	181	ProSitePatterns	Ribosomal protein L22 signature.	127	151	IPR018260	GO:0003735\|GO:0005840\|GO:0006412
	Vian2g03177	181	FunFam	60S ribosomal protein L17	1	175	-	-
	Vian2g03177	181	MobiDBLite	consensus disorder prediction	154	181	-	-
	Vian2g03177	181	NCBIfam	50S ribosomal protein L22	4	154	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Vian2g03177	181	SUPERFAMILY	Ribosomal protein L22	1	154	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Vian2g03177	181	CDD	Ribosomal_L22	15	151	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Vian2g03177	181	Hamap	50S ribosomal protein L22 [rplV].	2	154	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Vian2g03177	181	Pfam	Ribosomal protein L22p/L17e	17	152	IPR001063	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g03177	Vian-Chr2	52247432	52249000	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian2g03177	1	174	Cytoplasmic Ribosomal Protein Gene Family	AT1G27400	91.954	1.57e-120	336

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g03177	K02880		-	gmx:100305777	348.977

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian2g03177	2	52247432	52249000	Vian1g02675	1	40008876	40012001	PCT