Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03173 ATGTGGATAATGGATATTCCCGAGGTTGAAGAAAATCTATTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTCTCTTTCGGCAATACACTGCAAGATATTGTTATTATTCCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGCTCATTGCATGTAGCCTTAGAAAAGACAAAGAATGTTCTTCGACACTGCTCAGAGTCGAGTAAACTTTACTTGGCTATAACCGCAGATTCTGTTCTTCTAAAATTTGAAAAGGCTAAATGTGCTCTTGGGGATAGTCTTAATGGGGTGAAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGATGAAATTGTGAATGAACTTGCAAATACGGTATTTGCACTTGATCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTTCAAAAGGGAAGAAAGCTTAATGATTCTAATGACAGTAGTGAACTTGAATGCTTTCATCTAGCTGCTACTACTATTGGAATCACTTCTTCAAGAGCCGCTCTTGCAGAAAGAAGATCTCTTAGAAAACTCATAGAAAGAGCTCGAGCTGAGGATGACAAGCGGAAAGAATCAATTATTGCTTACCTTTTACACCTTATGAGGAAATATTCCAAATTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTACCGGTGGTCATTTGCATGTCTTTGACAGGCAGCTTTCAAAACTTAGTTCCTTTAACTTTAAGCCTAGTAATAGGGAATCAGGGCAGATGCTCGTTTTGCCTGAAGAGTTACGATGCCCAATATCTCTACAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGCATTGAGAAGTGGTTCAGAGATGGGCACAAGACCTGCCCAAAGACACAACAGAAACTTTCACATCTTTCTTTGACTCCTAATTACTGTGTGAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAAGCCCTCCAGAATCTCTTGATTTTAACTACTGGAGATTGGCGTTATCAGATACTGAATCCACAAATTCAAGATCTGCAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTATCAAAGTTGTTCCTGTAGAAGAAGAGAGTGGTATCTCAGAGGAAATGGGGGGGAATGCAGCTGAGGGCCTTTCTGCACAAGAGGAAGAAGATCATGAACGGTATCTTAGTTTTCTTAAAGTCTTGTCAGAAGGGAACAATTGGAAGAGGAAGTGCAAAGTTGTTGAACATTTGAGGTTGTTGCTGCGGGACGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGATGCACTTATTCAGTTTCTGCAATCAGCCGTGCATGAAGGGAATGTGATGGCTCTTGAAAATGGAGCCATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATCTTATCACTGTTGGAGGAAATGATATCAAAAACTAGTTCCCATGGTTGTGTAGCCGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAGGACGTGATTGGCACGAGTCAGGCTGTCCAGTTCCTTATCCAGATTCTTCACGCCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAATATTTCTACATTGTCCTCCAACATTCCACATCTCCTTTCATCTGGCATCATTGAAAGCCTACGATCCATTCTTGTAGACCAGGGTGATTGCAGTTTGACAGAAAAATGCCTTGCTGTTTTGATAAATTTGGCTGTCTCTCCAGCAGGAAGAGAGCAAATGATTTTGGCTCCTGCACTCATAAGTGCCTTGGCGTCCACGCTGGATACTGGTAAGCTCACAGAGCAGGAGCAAGCTGCATCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGGAATGCTGTGAGATGGTCTTGCAAGAAGGCGTTATCCCTGCGTTGGTGTCATTATCTGTAAATGGAACCTCGAGAGGGAGAGAAAAGGCTCAGAAACTTTTGACGGTCTTCCGAGAGCAGCGTCAACGGGACCATTCACCTGTTGAGACAAATCAATGTGAACCTGAAAGTAGTGATTTCTCTATGCCTCCTCCTGAAACCAAACCGTTATGTAAATCAATATCCAGAAGAAAGGTGGTAGGGAAAGCTTTTAGATTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2313 0.4189 MWIMDIPEVEENLFAASDAKLHGEMCKSLSAIHCKILLLFPSLEAARPRSKSGIQALCSLHVALEKTKNVLRHCSESSKLYLAITADSVLLKFEKAKCALGDSLNGVKDIVPQSIGCQIDEIVNELANTVFALDPSEKQVGDDLIALLQKGRKLNDSNDSSELECFHLAATTIGITSSRAALAERRSLRKLIERARAEDDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGITGGHLHVFDRQLSKLSSFNFKPSNRESGQMLVLPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHKTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPESPPESLDFNYWRLALSDTESTNSRSANSVGSCKLKGIKVVPVEEESGISEEMGGNAAEGLSAQEEEDHERYLSFLKVLSEGNNWKRKCKVVEHLRLLLRDDEEARIFMGANGFVDALIQFLQSAVHEGNVMALENGAMALFNLAVNNNRNKEIMISAGILSLLEEMISKTSSHGCVAALYLNLSCLEEAKDVIGTSQAVQFLIQILHAKTEVQCKIDSLHALYNISTLSSNIPHLLSSGIIESLRSILVDQGDCSLTEKCLAVLINLAVSPAGREQMILAPALISALASTLDTGKLTEQEQAASCLLILCNRSEECCEMVLQEGVIPALVSLSVNGTSRGREKAQKLLTVFREQRQRDHSPVETNQCEPESSDFSMPPPETKPLCKSISRRKVVGKAFRFLWKSKSYSVYQC 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03173 770 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Vian2g03173 770 SUPERFAMILY RING/U-box 273 358 - -
Vian2g03173 770 Coils Coil 178 198 - -
Vian2g03173 770 Gene3D - 406 727 IPR011989 -
Vian2g03173 770 PANTHER U BOX DOMAIN-CONTAINING 24 709 - -
Vian2g03173 770 SMART arm_5 544 585 IPR000225 GO:0005515
Vian2g03173 770 SMART arm_5 628 669 IPR000225 GO:0005515
Vian2g03173 770 SMART arm_5 459 503 IPR000225 GO:0005515
Vian2g03173 770 SMART arm_5 505 543 IPR000225 GO:0005515
Vian2g03173 770 SMART arm_5 586 627 IPR000225 GO:0005515
Vian2g03173 770 SMART arm_5 671 711 IPR000225 GO:0005515
Vian2g03173 770 CDD RING-Ubox_PUB 283 335 IPR045210 -
Vian2g03173 770 MobiDBLite consensus disorder prediction 713 738 - -
Vian2g03173 770 SUPERFAMILY ARM repeat 432 711 IPR016024 -
Vian2g03173 770 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 470 516 IPR000225 GO:0005515
Vian2g03173 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 355 IPR013083 -
Vian2g03173 770 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Vian2g03173 770 FunFam RING-type E3 ubiquitin transferase 281 355 - -
Vian2g03173 770 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03173 Vian-Chr2 52211070 52214695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03173 4 769 U-box Gene Family AT1G24330 63.636 0.0 982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03173 - - gmx:100804344 1267.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03173 2 52211070 52214695 Vian2g03173 2 52211070 52214695 ECH
Vian2g03173 2 52211070 52214695 Vian1g02691 1 40562636 40566124 PCT