Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03171 ATGATGGTGCTGGCGAATTCTGGTTCGGGCCTTCGGAGACAGGTTTTTCCCGTGGACTACGAAACGGAGCTTTCGCAGCGTCTCGTAGAAGCGGCTTATTATGGCGACACCGACTCTGCTTTTGACTTTGTCGACAATCCCTCTGTCGACGTTAACTTCGTCGGAACGGTGTCGTTTAAGTTCAAAACGACGGAGATCGTGCTGCAGGACGAGTCGCCTCACCGAGTTAACTCGGTGTACGAGGAGTTCAAGACCGAGCTCACCGCTCTGTTCCTGGCCGCGCACACAGGGAATTTGACACTTCTTCGGAAGCTTCTGGTAACGCCTCTCAATGCTGTTTTCATTGTGTTTTGTTGTGATTTGTTTCTTAAAACGACGTCGAAGCATTCGACAGAACCAAATGAAGTGCCTGCTTTTGCGTTATGTGTGATTGGGAGTGCTAATGCTCGATATTTGTTTTCGTTTTCTTTCCGTTTGATTGATTTACCAAATGTTGGAGCTAATGTAAATATGAGAATGTTCCGGGGCTATGCCACAACAGCGTCAGTGAGAGAAGGGCATCTAAAAGTGTTGGAGGTCCTCATCAATGCTGGGGCATCACAACTTGCATGCGAGGAGGCTCTAATGGAAGCAAGCTATTTGGGCAGGGCCAGATTTGTTGAATTACTCATGCAATCCAACATGATTCGTCCTCAGGTTGCAGTTCATGCCCTTGTCTCTGCCTGTTGCAGAGGCTTCGTTGAGGTTGTTGATGTACTCATCAAGCATGGAGTGGATGCCAATGCAATTGATAGGACTTTGCTTCAATCTTCAAAGTCATTTCTTCATGCTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGGCAGATTGATGTTGTTAGATTACTGTTGCAGGTTGGAGTAAGGCTTGACATGAAGGTCAAACTGGGGGCTTGGTCCTGGGACACAGATACAGGAGAAGAATTTCGTGTAGGTGTTGGACTAGCTGAGGCCTATCCAATCACCTGGTGTGCCGTTGAGTATTTTGAGTCCACTGGTGCTATATTGCATATGCTGCTCTGCCATCTCTCACCTAATAGCTTACACATTGGGAGGAGTCTCTTGCACCATGCTATCACCTGTAACAACGAAAGAGCTGTAAATATTCTTCTAAACAATGGTGCTGATACAGAAGTGACTGTGCAAACCACTGAAGAAACCAATGAACGGCCTATTCACATTGCTGCACGGGTTGGATCATGCAACATTCTTCAGTGCCTGATCAATAGTGGTTGTAACTTGGATTCCCAGACAAAATGTGGAGATACAGCACTGATGATCTGCACAAGGCACAAACATGAGAAGTGCCTTGGGGTCCTAGCATCAGCAGGTGCTGATTTGGGAATGGTAAATTCATCTGATCAATGTGCAACTTCAATTGCAAACTTTGTTCAGTGGACTAAAGTCTACCAGAAAGTGATATTGGATGTAATCAGAGCAGGGAAGGTTGTTAAATCAAGCAATGCCGCTAGATTCTCCGCATTGTTATTTGTAACTCGTGCAAATGACATGGAGGGTATGAAGAAACTCATTGAAAATGGGAACATCAATCTGAATGAGCAAAATGCAAATGGATTTTCTGCTGCTATGATAGCTGCTGTAGTGGGTAACGTGGAGGCTTTGAAGTTGCTTCTTTATGCAGGAGCTGACGTGACTAGGCTTAAAAACAAATATGGTTTGACAGCACTTAACCTCGTTGATGTGAGCCAAAACAGTGAAGCGTTCCACAAGGTGATGCTTGAATATGCACTTAAAGGAGGAGGCGATGGTTCAATTGAGGCAAACCCTCTCCACCGTGCAGCTTGCTACGGAGACATAAGCATTGTTCACAAACTACTAAAAGAGGGTTATGAAGTAAATGCTTTTGATGGTGAAGGATATACCCCTTTGATGTTAGCAGCAAGAGGGTGCCGTGGTGAAATGTGTGAGCTTTTGATCTCATATGGAGCTGAATGTGATATTCAGAATGAGAGACATGAGACAGCCCTTTCACTTTCCAGAGAAAATGGTGCAGGAAATGATGCTGAACGTGTGATTTTGGATGAGCTAGCTAGAAAACTGGTCTTGGGTGGACATCGTGTGAAGAAGCATACAAAGTGTGGCAAAGGTTCACCTCATGGTAAGTTACTACAGATGATTGGTGCTGCTGGAATCTTACGTTGGGGAAAATCAAGTAAGAGAAATGTGATTTGTAAAGAGGCTGAGGTTGGGCCAAGTGTGAAATTTCGATGGAATCGTAGGAGGAAGTTTGATGTCGAGGAACCAGGATTGTTCCATGTTGTTACTACAAAAGATAAAGAGGTACATTTTGTGTGTGAAGGAGGGGTTGAAATGGCTGATTTGTGGGTAAGGGGGATTCAATTAGTAACTAGAGAAGCCATTTCTGGTAGAAGAGCTCCTGAGGTTTGA 2457 0.4469 MMVLANSGSGLRRQVFPVDYETELSQRLVEAAYYGDTDSAFDFVDNPSVDVNFVGTVSFKFKTTEIVLQDESPHRVNSVYEEFKTELTALFLAAHTGNLTLLRKLLVTPLNAVFIVFCCDLFLKTTSKHSTEPNEVPAFALCVIGSANARYLFSFSFRLIDLPNVGANVNMRMFRGYATTASVREGHLKVLEVLINAGASQLACEEALMEASYLGRARFVELLMQSNMIRPQVAVHALVSACCRGFVEVVDVLIKHGVDANAIDRTLLQSSKSFLHANVDCNALFAAVVSRQIDVVRLLLQVGVRLDMKVKLGAWSWDTDTGEEFRVGVGLAEAYPITWCAVEYFESTGAILHMLLCHLSPNSLHIGRSLLHHAITCNNERAVNILLNNGADTEVTVQTTEETNERPIHIAARVGSCNILQCLINSGCNLDSQTKCGDTALMICTRHKHEKCLGVLASAGADLGMVNSSDQCATSIANFVQWTKVYQKVILDVIRAGKVVKSSNAARFSALLFVTRANDMEGMKKLIENGNINLNEQNANGFSAAMIAAVVGNVEALKLLLYAGADVTRLKNKYGLTALNLVDVSQNSEAFHKVMLEYALKGGGDGSIEANPLHRAACYGDISIVHKLLKEGYEVNAFDGEGYTPLMLAARGCRGEMCELLISYGAECDIQNERHETALSLSRENGAGNDAERVILDELARKLVLGGHRVKKHTKCGKGSPHGKLLQMIGAAGILRWGKSSKRNVICKEAEVGPSVKFRWNRRRKFDVEEPGLFHVVTTKDKEVHFVCEGGVEMADLWVRGIQLVTREAISGRRAPEV 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03171 818 ProSiteProfiles Ankyrin repeat profile. 641 673 IPR002110 GO:0005515
Vian2g03171 818 ProSiteProfiles Ankyrin repeat region circular profile. 366 395 - -
Vian2g03171 818 ProSiteProfiles Ankyrin repeat region circular profile. 403 431 - -
Vian2g03171 818 SUPERFAMILY Ankyrin repeat 28 312 IPR036770 -
Vian2g03171 818 ProSiteProfiles Ankyrin repeat region circular profile. 641 673 - -
Vian2g03171 818 ProSiteProfiles Ankyrin repeat profile. 540 572 IPR002110 GO:0005515
Vian2g03171 818 Pfam Ankyrin repeats (3 copies) 404 465 IPR002110 GO:0005515
Vian2g03171 818 Pfam Ankyrin repeats (3 copies) 596 672 IPR002110 GO:0005515
Vian2g03171 818 Gene3D - 597 702 IPR036770 -
Vian2g03171 818 Gene3D - 235 321 IPR036770 -
Vian2g03171 818 SUPERFAMILY Ankyrin repeat 367 692 IPR036770 -
Vian2g03171 818 ProSiteProfiles Ankyrin repeat region circular profile. 540 567 - -
Vian2g03171 818 Gene3D - 486 596 IPR036770 -
Vian2g03171 818 PANTHER ANKYRIN REPEAT-CONTAINING 22 803 - -
Vian2g03171 818 SMART ANK_2a 174 203 IPR002110 GO:0005515
Vian2g03171 818 SMART ANK_2a 233 262 IPR002110 GO:0005515
Vian2g03171 818 SMART ANK_2a 403 432 IPR002110 GO:0005515
Vian2g03171 818 SMART ANK_2a 540 569 IPR002110 GO:0005515
Vian2g03171 818 SMART ANK_2a 641 670 IPR002110 GO:0005515
Vian2g03171 818 SMART ANK_2a 366 395 IPR002110 GO:0005515
Vian2g03171 818 SMART ANK_2a 436 465 IPR002110 GO:0005515
Vian2g03171 818 SMART ANK_2a 85 115 IPR002110 GO:0005515
Vian2g03171 818 SMART ANK_2a 279 308 IPR002110 GO:0005515
Vian2g03171 818 SMART ANK_2a 506 536 IPR002110 GO:0005515
Vian2g03171 818 SMART ANK_2a 608 637 IPR002110 GO:0005515
Vian2g03171 818 ProSiteProfiles Ankyrin repeat region circular profile. 608 639 - -
Vian2g03171 818 ProSiteProfiles Ankyrin repeat profile. 608 640 IPR002110 GO:0005515
Vian2g03171 818 ProSiteProfiles Ankyrin repeat profile. 403 435 IPR002110 GO:0005515
Vian2g03171 818 Gene3D - 18 234 IPR036770 -
Vian2g03171 818 ProSiteProfiles Ankyrin repeat profile. 366 398 IPR002110 GO:0005515
Vian2g03171 818 Gene3D - 355 485 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03171 391 589 Ion Channels AT2G25600 25.248 6.62e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03171 - - gmx:100795638 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03171 2 52191478 52196448 Vian2g03171 2 52191478 52196448 ECH