Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03151 ATGGATAATGGGTGTTTCTCTTCCCCTCGACGTGATTTCCCTGCTGGTCTGCGAGTTCTCGTTGTGGATGATGATCCTACGTGGCTCAAGATCCTTGAGAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGGCATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATTAGCGATGTAAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTGATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTCATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAGCATGTCTTTAGAAAAAGGATACACGAGGCAAAAGAGTTTGAAAGCTTTGAGAGTTTTGAGAGCATTCACTTGATGAGAAATGGATCAGAGCTATCAGATGAGGGGAACTTGTTTGCTGTAGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGTATGGATCCATCATCTGCCAAGAAAGCTAGAGTAGTCTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCAGATTGGATTTGATAAAGTTGGGCCCAAGAAAATATTGGATCTGATGAATGTTCCATGGCTGACTAGAGAGAATGTTGCCAGCCACTTGCAGAAATACCGGCTTTATTTGATTAGGATTCAGAAAGAAAACGATCGGAGATCTTCCTCGAGTGGTATGAAGCATTCAGATTTTCCTTCAAAAGATCTGGGAAGTTTTGGATTTCAAAACCCAGTAAACAAGCAACAAAATGATGTTTCAACTGACAGCTACAATTATTCGGATGGATCATTACATCTTCCTACCGTGGAAAATAAAAATTATGAAGGCGATAAGGGAAGTGTTTCACAGTTCACCATAGCAAAAAAAGGAAGGCCCTTGACTGGTAACGTCACCGACTCAAATATGAGAGAGAGTTCAAGGGTTGGCCTCAATCAACCTTTTGCCCAGTCAGAAGGAAACCATGCAGTGTTTGATTGCTCCTTGCCAACACAGTACTCATGGACTGAAGTTCCAAACATGCAACTCAAAGAAGAACACAAGTCACTTGTTCATTTAGAAGATAGCTTCAATCAGATGCCATTACACGGTAAGCAGCATCACATCCAAGTTGATCAATCACAGTCAGTTGCTTCAATTAGTTCAGCTCCCTCTATAACGGAGGAAGAGGTTCCTGCTTGTATAGAAGCAAAACCTTTGTTTTCAGATTTCAAGAATGATCGATCCAGTTCTGTGAATTCAATAGGGAATGCAGTTGACACCTTTCCAATTCAACCAGGAAGTCTTGCTATGAATGCTCAATCTTTAGAACCCATTTCAACTACAAATTCAGGATTGAAAGCACATGGATATAATAACCTCAGTTGCATTTCTGATGTGGAAATTTACCAAAGAAACCTTCTTTTGGGAGGTGAGGCAGCTTCTGCACCTTTGGATGAGGATTTGCATTTCCAGTGGCTGCAGGGTGAATGTTATAACATGAACTTCGGTCTGCAGAATATAGGAATGTCAGAATATTATGATCCAGGGCTTATTGCAGAAGCTCCAAGTCACTTATATGATTCAGCCGATTACTCGGTTATAGATCAAGGTCTATTCATAGCATGA 1737 0.4059 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAKEFESFESFESIHLMRNGSELSDEGNLFAVEDVTSTKKRKDADNKHDDKECMDPSSAKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLIRIQKENDRRSSSSGMKHSDFPSKDLGSFGFQNPVNKQQNDVSTDSYNYSDGSLHLPTVENKNYEGDKGSVSQFTIAKKGRPLTGNVTDSNMRESSRVGLNQPFAQSEGNHAVFDCSLPTQYSWTEVPNMQLKEEHKSLVHLEDSFNQMPLHGKQHHIQVDQSQSVASISSAPSITEEEVPACIEAKPLFSDFKNDRSSSVNSIGNAVDTFPIQPGSLAMNAQSLEPISTTNSGLKAHGYNNLSCISDVEIYQRNLLLGGEAASAPLDEDLHFQWLQGECYNMNFGLQNIGMSEYYDPGLIAEAPSHLYDSADYSVIDQGLFIA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03151 578 FunFam Two-component response regulator 17 173 - -
Vian2g03151 578 SUPERFAMILY CheY-like 16 147 IPR011006 -
Vian2g03151 578 Gene3D - 17 193 - -
Vian2g03151 578 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 321 IPR045279 GO:0009736
Vian2g03151 578 SUPERFAMILY Homeodomain-like 197 254 IPR009057 -
Vian2g03151 578 CDD REC_typeB_ARR-like 19 133 - -
Vian2g03151 578 MobiDBLite consensus disorder prediction 283 303 - -
Vian2g03151 578 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Vian2g03151 578 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Vian2g03151 578 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Vian2g03151 578 SMART REC_2 17 129 IPR001789 GO:0000160
Vian2g03151 578 FunFam Two-component response regulator 195 258 - -
Vian2g03151 578 Gene3D - 195 258 - -
Vian2g03151 578 MobiDBLite consensus disorder prediction 281 303 - -
Vian2g03151 578 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03151 Vian-Chr2 52019541 52023260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03151 13 257 Response Regulator Gene Family AT2G25180 58.065 6.09e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vian2g03151 Response_reg 1.5e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03151 K14491 - gmx:100797421 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03151 2 52019541 52023260 Vian2g03151 2 52019541 52023260 ECH