Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03150 ATGTGGCAAAATCAAGCCAATCATTCTTCTTACAGTGATTCTGTCAAGGCTCTTGAAGATGATATACAACATGCTAATTCCTTGGCATTGTCACTTCCTGGAGATTGTGATGGGAACTGTTTTCAGATGAAATTATCTTACAGCCCCTTTGCACCTCTTTTCTTGCACTTGATTCAATGGTTGGATCTTAGTTGCACAGATACTTTACCTGTGTATTTGGGATTACTCCACATACTAATTTTCAATGTATACGCTGATGGAATACCATCTATTTCCTCAAGTGAAAGGAAAGCAACTATAAAGGAATTTTATGCTGTTATATACCCTTCATTAAGGTTGCTTCAAGGCGAGTTTAACAATGATCCAAGACACAGTTATGCAGAAGTGAACAGAAAGAGGCTTGAAAAGGTTCTCAGTAAAGATTTAGAGGGAGATGAAGAATGTGGCATATGCATGGAAAACAACATGAAGATGGTTCTGCCTAATTGTGGACATTCCTTCTGCATAAGTTGCTTCCATGATTGGTACATGAGATCAGAGTCATGTCCCTTTTGCCGTGGAAGCATGAGAAGGATCAGTCCTGCAGATTTATGGATGGTCATTGGCAACAGTGATGTGGTTGACAGCTCCACCATTGCAAAAGACAATTTGAGACTTGAAATAGTTGAATCAGACAAATATGCTTTTCCTGTTTTGTGA 699 0.3891 MWQNQANHSSYSDSVKALEDDIQHANSLALSLPGDCDGNCFQMKLSYSPFAPLFLHLIQWLDLSCTDTLPVYLGLLHILIFNVYADGIPSISSSERKATIKEFYAVIYPSLRLLQGEFNNDPRHSYAEVNRKRLEKVLSKDLEGDEECGICMENNMKMVLPNCGHSFCISCFHDWYMRSESCPFCRGSMRRISPADLWMVIGNSDVVDSSTIAKDNLRLEIVESDKYAFPVL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03150 232 SMART ring_2 148 185 IPR001841 -
Vian2g03150 232 SUPERFAMILY RING/U-box 134 190 - -
Vian2g03150 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 195 IPR013083 -
Vian2g03150 232 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Vian2g03150 232 PANTHER RING FINGER PROTEIN 41, 151 9 218 - -
Vian2g03150 232 Pfam Zinc finger, C3HC4 type (RING finger) 145 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03150 Vian-Chr2 52012230 52014331 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03150 112 221 C3H Transcription Factor Family AT2G20030 29.839 2.61e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03150 - - gmx:100805014 388.267