Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03144 ATGGAGGGGTTGGACAGGTTTCTTGTGGCAACAAGCACCATAGGCTTCATTTGTGTGTGCAAGGTGTTTGTCAAATTTCTCAAGTGGGTGTGGGTGATGTTCTTGAGGCCACCAAAGAATCTCAAAGAATATGGTTCTTGGGCTATAATCACTGGATCCACTGATGGAATTGGCAAGGCCATGGCTTTTGAATTTGCATCCAAGGGACTCAACCTTCTCTTGGTTGGTCGAAACCCTCTGAAACTCGAGACGACATTGAAGGAAATAAGAGAGAGACATGGTGTTGAGGTCAAGTTTGTGGTCATAGATATGCAGAAAGTTAGTGGAGAGGAAATCGCTAAGAGAATAGAGGAAGCAATAGATGGTTTGGATGTGGGTTTGCTTGTTAATGGTGCTGGTTTGGCTTACCCTTATGCGAGATTCTTTCATGAAGTTGATTTGGAGCTTATGGATGCTATTGTGAAAGTGAATTTGGAGGCAACAACTTGGATCACAAAGGCTGTGATTCCGTCCATGCTCAAGAAGAAAAAGGGTGCTATAGTGAACATTGGTTCTGGTTCTTCTGTGGTGCTTCCATCATACCCTCTAGTCACTCTCTATGCTGCTACAAAAGGATACCTAGCCATGTTCTCCAGATGCATCAGTTTGGAGTATAAGCATCAAGGAATTGATATCCAGTGTCAGGTTCCATTATTTGTGTCAACCAAAATGACCAAAATGAAGAAATCAGTTTTTGTGCCAACACCAGAATTGTACAGCAAAACATGCACAAGGTGGATTGGATATGAAAAACTGGTTGAGCCATACTTTCTTCATTCTGTGCAAGGTTTTCTCATAAGAGCAATTCCTCATGCACTCATGGATTCCTACATGTTACGATATTTTCTTTATTTTCGTGCAAAAGGACTCTCCAAGGACTCCAACAAGGCTAAAGAAACATCATTAGCTGCATCTGATTCCCAATAA 966 0.4182 MEGLDRFLVATSTIGFICVCKVFVKFLKWVWVMFLRPPKNLKEYGSWAIITGSTDGIGKAMAFEFASKGLNLLLVGRNPLKLETTLKEIRERHGVEVKFVVIDMQKVSGEEIAKRIEEAIDGLDVGLLVNGAGLAYPYARFFHEVDLELMDAIVKVNLEATTWITKAVIPSMLKKKKGAIVNIGSGSSVVLPSYPLVTLYAATKGYLAMFSRCISLEYKHQGIDIQCQVPLFVSTKMTKMKKSVFVPTPELYSKTCTRWIGYEKLVEPYFLHSVQGFLIRAIPHALMDSYMLRYFLYFRAKGLSKDSNKAKETSLAASDSQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03144 321 PANTHER RH59310P 8 309 - -
Vian2g03144 321 Pfam short chain dehydrogenase 47 241 IPR002347 -
Vian2g03144 321 Gene3D - 41 264 - -
Vian2g03144 321 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 41 267 - -
Vian2g03144 321 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 187 215 IPR020904 GO:0016491
Vian2g03144 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 299 IPR036291 -
Vian2g03144 321 PIRSF 11-beta-HSD1 2 305 - -
Vian2g03144 321 CDD 17beta-HSD1_like_SDR_c 45 283 - -
Vian2g03144 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Vian2g03144 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 200 219 IPR002347 -
Vian2g03144 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 134 IPR002347 -
Vian2g03144 321 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Vian2g03144 321 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Vian2g03144 321 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Vian2g03144 321 PRINTS Glucose/ribitol dehydrogenase family signature 123 134 IPR002347 -
Vian2g03144 321 PRINTS Glucose/ribitol dehydrogenase family signature 200 219 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03144 Vian-Chr2 51972545 51974352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03144 14 309 Lipid Metabolism Gene Families AT1G67730 50.000 1.45e-109 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03144 K10251 - gmx:100816067 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03144 2 51972545 51974352 Vian2g03144 2 51972545 51974352 ECH
Vian1g03420 1 56669879 56672600 Vian2g03144 2 51972545 51974352 PCT