Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03138 ATGGGTTTTTACTGTAGGAGCATTAATGGCTCAAGGAGAAAGTTGGGGTACCTTTCTTGTGGTACGGGGAACCCCATTGATGATTGTTGGAGGTGCGACCCCAACTGGGAAAGGAATCGCAAGCGTTTAGCTAATTGTGGTATTGGGTTCGGCAAGAATGCCATTGGTGGAAGAGATGGGAAACTATACGTGGTGACTGACCCCAGTGATAACCCTATGAACCCTAAACCAGGTACATTGAGACATGGTGTTATCCAAGAAGAGCCTTTGTGGATCATTTTCAAGCGTGACATGGTGATCAAGCTACACATGGATCTCCTTGTTAATTCTTACAAAACCATTGACGGAAGAGGAGCAACTATCCACATTGCTGGAGGGCCTTGCATTAAAGAGGAAGAATGCCTAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAATAGATTTCTTGCCCCAAATGATGAAGACCATAAAGAGGTGACCAAACATTTTAAATCATCAGAAGGAGAGTGGAAGAAATGGAATTGGAGGTCTGAAGGAGATCTAATGTTGAATGGCGCCTTCTTCACACCGTCAGGGGCTGGAGCAACAGCTAGATATGATAGAGCGTCAAGCATGGCAGCAAGACCACCTCTACTTGTGCCTTCAATGACGGCAGGGGCTGGTGCACTTAGATGCAAAAATGGCCACCTGTGCGGACACTAG 708 0.4661 MGFYCRSINGSRRKLGYLSCGTGNPIDDCWRCDPNWERNRKRLANCGIGFGKNAIGGRDGKLYVVTDPSDNPMNPKPGTLRHGVIQEEPLWIIFKRDMVIKLHMDLLVNSYKTIDGRGATIHIAGGPCIKEEECLGGSSSPTIFSQGNRFLAPNDEDHKEVTKHFKSSEGEWKKWNWRSEGDLMLNGAFFTPSGAGATARYDRASSMAARPPLLVPSMTAGAGALRCKNGHLCGH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03138 235 PRINTS Pollen allergen Amb family signature 69 94 IPR018082 -
Vian2g03138 235 PRINTS Pollen allergen Amb family signature 46 63 IPR018082 -
Vian2g03138 235 PRINTS Pollen allergen Amb family signature 105 121 IPR018082 -
Vian2g03138 235 Gene3D - 23 131 IPR012334 -
Vian2g03138 235 Gene3D - 132 226 IPR012334 -
Vian2g03138 235 PANTHER PECTATE LYASE 18-RELATED 135 230 IPR045032 GO:0030570
Vian2g03138 235 SUPERFAMILY Pectin lyase-like 24 129 IPR011050 -
Vian2g03138 235 SUPERFAMILY Pectin lyase-like 135 226 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03138 Vian-Chr2 51938290 51939563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03138 131 233 Polysaccharide Lyase AT1G04680 53.398 9.52e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03138 K01728 - gmx:100803068 251.521