Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03133 ATGAACAACCCCGTTATTCAATGCCAATGGTACCCTATTCCTCTCCCTCTACCCTTACCGTTACCTTTACCCTTCCCACACCCTCTTCCTCCTCCTCCGCCTCCTCACCTCTCCACCTCCTCCACCCGCTCCCTCCTCCTCACGCCGCTCCCCTTCACCTCCGACTCCGCCCTCCGCGCCGAACTCCAGGCCTTCGGCGACGTCAGAGCCCTCCAAACGGAAGCCCTCCGCCACGGAATCCTCATCGTCCACTTCTACGACCTCCGCCATGCAGAGTCCGCCTTCGCCGCCATCCGCTCCATGCACCACCACTTCCCTCAGGTCGCCCCCGCCTCGCCAGGCCTCCTCTCCGCTCGCCCCATCTCCGCACACTACGTGCTCCCCTCCTCCTCCTCCATCCCCGACGCCCACAACCAAGGCACCCTCGTGGTCTTCAACTTAGACCCTCACCTCTCCACCGACCACCTCCGTCGAGTCTTCCACCCTTTCGGTCCCATAAAGGAATTGAGAGATACGCCATGGAAAAAGAACCAAAGATTCGTGGAGTTCTTCGACACCAGAGACGCTGCCAAGGCCTTGAAACACATGAACGGCAAGCAAATCCACGGGAAACCCATCATCATCGAGTTCAGCAGACCCGGTGGTCACACTCGCAAATTCTTCCACCACTCTCCTTCCTCCAAAACCACTCCTCTCGATTTCAATGCCCCACCACCACCCTTCCCTCCTTCCCCGCCTCGTCGTTTTGCTGCTCCTCGCTTGCATGCCTCTCACCCTCAATTCTCTCGCAATAAATCATTGCCAAGTCCCGTCAAGGTCCAAGATTCTGTGGATGAGGCAATTGGGTCAATCACTTTGACCGGGGATGTTGGAAATGGGGTTCAAGACCAGCACCACTCACATGCTGGTGGCCCCCCTAGGAGGAATCTTACCAGAAAGCAGAATTGCGAGACCACGCTAGTCCTAGCAACCACAAAGCAGCAGCAGCAGCAACAACACCCACAGCAACTACCTAGAAGTAGGCACTGGAAGGGAAAGCAGGCAAAGAAACTCGAAGCTCGCTTTCTAATTAAAGAGGATGCCATTGTCGAATCTGGTCCCAAAGATACTCGAACCACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTGAACATGCTGGATAATCACTGCATACACTGCAACGAGCAGATAGCAGACGGCCATGAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTCCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTCGTGAACATGACATCCCCGGAGGCCACACTCAGGCTCTACAAGGCCTTCCATCTTCAACATTGGGAGGTTTTTAACTCAAGAAAAATATGTGAAGTCACCTATGCAAGAGTTCAGGGTTTGGAGGCATTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGAACATTACCTGCCAGTGGTGTTTACACCACCTCGAGATGGCAGGGAACTCACCGAGCCACTTCCCTTAGTGGGGAACAGCACCAACAAGCAGCATCAACCACCCGTTTCACTTCTGAACTGCGATGATAATGGCGGTGATGACGTGGAAAGCAGCAAAAGCGGCGACGTAGGCGACGATGATGATGATGACACGAATGCAGAGGTTGGTGGTGAAGGAAGCCTAGAAGAAGACTATGAAGGGTAG 1713 0.5377 MNNPVIQCQWYPIPLPLPLPLPLPFPHPLPPPPPPHLSTSSTRSLLLTPLPFTSDSALRAELQAFGDVRALQTEALRHGILIVHFYDLRHAESAFAAIRSMHHHFPQVAPASPGLLSARPISAHYVLPSSSSIPDAHNQGTLVVFNLDPHLSTDHLRRVFHPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKHMNGKQIHGKPIIIEFSRPGGHTRKFFHHSPSSKTTPLDFNAPPPPFPPSPPRRFAAPRLHASHPQFSRNKSLPSPVKVQDSVDEAIGSITLTGDVGNGVQDQHHSHAGGPPRRNLTRKQNCETTLVLATTKQQQQQQHPQQLPRSRHWKGKQAKKLEARFLIKEDAIVESGPKDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADGHEQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFTPPRDGRELTEPLPLVGNSTNKQHQPPVSLLNCDDNGGDDVESSKSGDVGDDDDDDTNAEVGGEGSLEEDYEG 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03133 570 CDD RRM3_EAR1_like 371 472 IPR034458 -
Vian2g03133 570 Gene3D - 134 220 IPR012677 -
Vian2g03133 570 MobiDBLite consensus disorder prediction 288 345 - -
Vian2g03133 570 MobiDBLite consensus disorder prediction 506 570 - -
Vian2g03133 570 FunFam Terminal EAR1-like 1 319 477 - -
Vian2g03133 570 MobiDBLite consensus disorder prediction 222 251 - -
Vian2g03133 570 SMART rrm1_1 141 209 IPR000504 GO:0003723
Vian2g03133 570 MobiDBLite consensus disorder prediction 511 527 - -
Vian2g03133 570 SUPERFAMILY RNA-binding domain, RBD 141 450 IPR035979 GO:0003676
Vian2g03133 570 Gene3D - 312 476 IPR012677 -
Vian2g03133 570 MobiDBLite consensus disorder prediction 543 570 - -
Vian2g03133 570 PANTHER RNA RECOGNITION MOTIF-CONTAINING 367 491 - -
Vian2g03133 570 Pfam RNA recognition motif 2 371 481 IPR007201 -
Vian2g03133 570 MobiDBLite consensus disorder prediction 311 338 - -
Vian2g03133 570 FunFam Protein MEI2-like 1 139 231 - -
Vian2g03133 570 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 206 IPR000504 GO:0003723
Vian2g03133 570 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 213 IPR000504 GO:0003723
Vian2g03133 570 MobiDBLite consensus disorder prediction 232 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03133 Vian-Chr2 51906699 51909054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03133 135 212 Eukaryotic Initiation Factors Gene Family AT4G34110 32.927 2.07e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03133 - - var:108327668 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03133 2 51906699 51909054 Vian2g03133 2 51906699 51909054 ECH