Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03132 ATGGGTAGCAAAGGTGGAATTTTCCGTTATGCAGATGGAGTTGACAAATTTCTGTTACTGTTTGGGACATTGGGTTGCATTGGAGGTGGATTACAAACCCCTATGACAATGCTTGTTCTTGGTAGTTTGATAAATGATTATGAAGGTGGATCTGAACATTCCGTGCCCGACCAGGTTATAGACAAGTACGCTCTAAGGCTGCTTGGTGTTGCAATTGGGGTTGCTTTATCCTCCTTTATAGAAGGGGTATGTTGGACAAGAACTGCAGAGAGACAAACTTCCCGCATGAGAACTGAATACCTTAAATCAGTCCTAAGGCAAGAGGTTGGTTTCTTCGACAAGCAAACTGACTCTTCCACAACTTTCAAAGTTATTGCCACCATAACTTCTGATGCTCAAACAATCCAAGATACCATGGCCGATAAGGTGCCCAATTGTCTGGGTCACCTCTCAGCATTTCTCTCTAGCTTTATAGTGGCACTCTTCCTTTCATGGAGACTTGCAGTGGCTGCTTTTCCATTTTCAATCATGATGATCATGCCGGCAATCATATTTGGGAAGGCCATGAAAGAGCTGGGAAATAAAATGAAGGATGCATATGGAGTTGCTGGTAGCATAGCTGAACAAGCAATCTCTTCAATTCGCACTGTTTATTCATATGTGGGCGAGAAGCAAACGATGCAAGCGTTCAACTCGGGTCTTGAAAAAAGTATGGAGATTGGCATAAAACAAGGTCAAATCAAGGGAGTGATAATCGGTAGCATTGGGTTGCTATATGCTACTTGGGCATTCCAATCTTGGGTTGGCAGTGTTCTGGTCCGGACAAAAGGAGAAAGTGGTGGTCCTGTGTTTTGTGCTGAGATATGCATCATTTGGGGAGGACTGTCTCTGATGAGTGCACTCCCAAATCTTGGTTTCATATTAGAGGCAACAATAGCTACTACCCGGATGTTTGAGATGATTGATCGGGTGCCAAGCCTAAATTCTTACAGAGAAAAAGGAAAGGTCTTAACACATGCAAGAGGAGAAATCACATTTCAAGATGTTGAGTTTAGTTACCCATCAAGGCCAGATGCACTGATTCTCCAAGGACTCAATCTGAAAGTGCAGGCCGGAAAAACATTAGGCCTAGTTGGAGGGAGTGGTTCTGGCAAATCTACTATAATCTCTTTGCTTGAAAGATTTTATGATCCTGTTTACGGGGAGATATTGCTTGATGGATATGATATACAGACATTTCACGTTAAGTGGTTAAGGTCCCAGATGGGACTGGTAAATCAGGAGCCAATTCTCTTTGCAACATCCATAAGGGAAAACATTCTATTTGGCAAGGAAGGAGCTCCAATGGATGGAGTTATAAGCGCAGCAAAGGCAGCAAATGCACATGATTTCATTGTCAAACTTCCTGATGGATATGAAACTCAAGTGGGACAATTCGGTGCTCAGCTGTCTGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGGGCTTTGATAAGAGAACCCAAAATCCTACTACTTGATGAAGCAACAAGTGCTTTAGATTCACAGTCCGAAAGACTAGTGCAGGAGGCCCTTGAGAAAGCTTCTAGAGGTAGGACAACAATCATCATAGCGCATCGCCTGTCAACAATTCGTAAGGCTGATTCAATAGTAGTTCTTCAATCAGGAAGAGTCGTTGAATGTGGTTCCCATGATGAGCTACTCCAACTGAACAATGGACAAGGAGGGGCTTACAGAAAAATGCTACAGCTGCAACAAGCGACAAGTCAAAATGAAATTGCATTGCATACAATAAACAAGACATCCTTAACTATGGAAAATCTTACAAGTTCAAATTCGAGATGGCAAAGTAGCCCAACTCATCATGCATTTAGCTCAACACAACCATTTAGTCCCATATATTCAATCAGTGTTGTAGGGTCTAGCTTTGATGACTACGACAAGGAAAACTTTGAGAAATCTTCACATGCTAACTTCTCTCAATGGCGTTTACTAAGAATGAATTCCCCTGAGTGGAAACATGCTTTGCTTGGTTGTTTAGGGGCCATTGGCTCTGGAATATGTCAACCAATTTACTCCTATTGCTTGGGAATAGTTGCATCTGTCTACTTTATAAAAGATGACTCTCTCATCAAATCAAAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATTGCTGTTGTCTACTTCATTTCAGGCCTCCTTCAACATTACAATTTTACCATTATGGGGGAGAGTTTGCTAAAAAGGGTGCGAGAAAATTTGCTAGAGAAGGTGTTGACTTTTGAGATGGGATGGTTTGATCAAGAGGAGAACGGAAGTGCAGCAATTTGTGCTCGTTTGGCAACTGAAGCCAACTTGGTCAGATCCCTTGTTGCAGAACGAATGTCATTGATAGTTAATATTTCTGTTATGGCTCTTTTGGCTTTTGTACTTAGTTTAATTGTTACGTGGAGGGTGGCTATAGTCATGATTGCAATGCAGCCTTTGATCATTGCATGTTTCTACTCAAAAAACATTCTCATGAAAAGTATGGCAGGGAAAGCAAGAAGGGCTCAGAGAGAAGGTAGTCAATTAGCAATGGAAGCTACTGTTAACCACAGGACTATTGCTGCATTTTCATCTGAGAAAAGGATTTTAAACTTGTTCAGAACTTCTATGGAGGGCCCTAAGAAGGAAAGCATCAAGCAATCATGGATTTCGGGTTCCATTTTGAAAAGTGAGATTGAACCGGAAGATCCTAGACATAGAAAGTGTAAAAATTCTTTGAAGGGCCATATAAAACTTAGAGATGTCTTTTTCTCGTACCCAACAAGGCCAGACCAAATGATTCTCAAGGGTCTCAATCTTGATATTGAAGCAGGCAAAACAGTTGCATTAGTGGGACAAAGTGGGTCGGGTAAATCAACCATCATTGGCTTAATCGAAAGATTTTATGACCCCGTGAAGGGATCCATATCCATAGACAATTGTGACATAAGGGAATTTAACTTAAGAAGTTTGAGAGCACATATTGCCTTGGTTAGTCAGGAGCCAACTCTCTTTGCAGGAACTATACGTGACAACATTGTTTACGGAAAAAAGGATGCATCAGAAGATGAAATAAGAAAGGCAGCACGTCTTTCAAATGCTCATGAGTTTATAAGCTATCAGGAGGGCAGAAGCAGAGAATAG 3174 0.4162 MGSKGGIFRYADGVDKFLLLFGTLGCIGGGLQTPMTMLVLGSLINDYEGGSEHSVPDQVIDKYALRLLGVAIGVALSSFIEGVCWTRTAERQTSRMRTEYLKSVLRQEVGFFDKQTDSSTTFKVIATITSDAQTIQDTMADKVPNCLGHLSAFLSSFIVALFLSWRLAVAAFPFSIMMIMPAIIFGKAMKELGNKMKDAYGVAGSIAEQAISSIRTVYSYVGEKQTMQAFNSGLEKSMEIGIKQGQIKGVIIGSIGLLYATWAFQSWVGSVLVRTKGESGGPVFCAEICIIWGGLSLMSALPNLGFILEATIATTRMFEMIDRVPSLNSYREKGKVLTHARGEITFQDVEFSYPSRPDALILQGLNLKVQAGKTLGLVGGSGSGKSTIISLLERFYDPVYGEILLDGYDIQTFHVKWLRSQMGLVNQEPILFATSIRENILFGKEGAPMDGVISAAKAANAHDFIVKLPDGYETQVGQFGAQLSGGQKQRIAIARALIREPKILLLDEATSALDSQSERLVQEALEKASRGRTTIIIAHRLSTIRKADSIVVLQSGRVVECGSHDELLQLNNGQGGAYRKMLQLQQATSQNEIALHTINKTSLTMENLTSSNSRWQSSPTHHAFSSTQPFSPIYSISVVGSSFDDYDKENFEKSSHANFSQWRLLRMNSPEWKHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDDSLIKSKIRLYSSIFCCIAVVYFISGLLQHYNFTIMGESLLKRVRENLLEKVLTFEMGWFDQEENGSAAICARLATEANLVRSLVAERMSLIVNISVMALLAFVLSLIVTWRVAIVMIAMQPLIIACFYSKNILMKSMAGKARRAQREGSQLAMEATVNHRTIAAFSSEKRILNLFRTSMEGPKKESIKQSWISGSILKSEIEPEDPRHRKCKNSLKGHIKLRDVFFSYPTRPDQMILKGLNLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPVKGSISIDNCDIREFNLRSLRAHIALVSQEPTLFAGTIRDNIVYGKKDASEDEIRKAARLSNAHEFISYQEGRSRE 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03132 1057 SMART AAA_5 371 557 IPR003593 GO:0016887
Vian2g03132 1057 SMART AAA_5 954 1052 IPR003593 GO:0016887
Vian2g03132 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 921 1051 IPR027417 -
Vian2g03132 1057 FunFam ABC transporter B family member 4 334 592 - -
Vian2g03132 1057 Gene3D - 916 1049 IPR027417 -
Vian2g03132 1057 Gene3D - 334 586 IPR027417 -
Vian2g03132 1057 Gene3D ABC transporter type 1, transmembrane domain 7 904 IPR036640 GO:0005524|GO:0016020
Vian2g03132 1057 SUPERFAMILY ABC transporter transmembrane region 663 902 IPR036640 GO:0005524|GO:0016020
Vian2g03132 1057 CDD ABC_MTABC3_MDL1_MDL2 344 585 - -
Vian2g03132 1057 PANTHER ABC TRANSPORTER B FAMILY 7 689 IPR039421 -
Vian2g03132 1057 Pfam ABC transporter transmembrane region 20 275 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g03132 1057 Pfam ABC transporter transmembrane region 677 899 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g03132 1057 Pfam ABC transporter 362 511 IPR003439 GO:0005524
Vian2g03132 1057 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 284 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g03132 1057 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 317 - -
Vian2g03132 1057 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 902 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g03132 1057 SUPERFAMILY ABC transporter transmembrane region 7 325 IPR036640 GO:0005524|GO:0016020
Vian2g03132 1057 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 902 - -
Vian2g03132 1057 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 580 IPR003439 GO:0005524
Vian2g03132 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 585 IPR027417 -
Vian2g03132 1057 Gene3D ABC transporter type 1, transmembrane domain 906 915 IPR036640 GO:0005524|GO:0016020
Vian2g03132 1057 Pfam ABC transporter 945 1043 IPR003439 GO:0005524
Vian2g03132 1057 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03132 Vian-Chr2 51896997 51901967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03132 7 903 Calmodulin-binding Proteins AT2G36910 41.758 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03132 K05658 - gmx:100804664 1566.21