Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03119 ATGGAGATGTGCGTGCACCATCTGCTCATTCTGCTCCTGTCTCTCTGCAGTTCCTTAGACTGTGTGAATGCTCAGTGGAATCCATTAAGCCCTGCCACATACGAGGAGATGAACCGTAGTGACAACTTGAAGGCCTCACTCACTCTCTCCTTCTCCTGTGTCTCCATTGCCTTCTTCTTGTTCCTTTTCTTCAAAATCCGCGCGCGTTTTTTCCCCCGCCCTCCTTACATCAAGCCTCTCCCGAAAACAACCGCCGAAGCCATCCAAAGATGTCCCACCTTCGATTTCTCCGAGATGAAGGAGCTGAGCGTGGGGAATGGAGCAGAGGAGTGCGCGGTGTGCTTGGTGGAGTTCGAAGACTCCGACACCGTTAAGATGCTGCCGCTCTGCCAACATGTTTTCCACCAGCATTGCATCGATCAATGGCTACCCTCTCGCCTCACGTGCCCCATTTGTCGCCAGAAGCTTATATCCGATGATACTGAAGCAAACATCACCGAGTTTGCTTCAGTAGAACGAGAAGAAGAAGAAGAAGAAGAAGAAAATGGTGACACTGCAGAGTTTACTGAGGTGGCAATAGCTGCAGCAACGGAACAACATGAACATGAAACCGAAGCTGATAACGCTGTGGGATAG 636 0.5047 MEMCVHHLLILLLSLCSSLDCVNAQWNPLSPATYEEMNRSDNLKASLTLSFSCVSIAFFLFLFFKIRARFFPRPPYIKPLPKTTAEAIQRCPTFDFSEMKELSVGNGAEECAVCLVEFEDSDTVKMLPLCQHVFHQHCIDQWLPSRLTCPICRQKLISDDTEANITEFASVEREEEEEEEENGDTAEFTEVAIAAATEQHEHETEADNAVG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03119 211 CDD RING-H2_EL5-like 110 153 - -
Vian2g03119 211 Pfam Ring finger domain 110 153 IPR001841 -
Vian2g03119 211 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Vian2g03119 211 SUPERFAMILY RING/U-box 110 159 - -
Vian2g03119 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 43 174 - -
Vian2g03119 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 160 IPR013083 -
Vian2g03119 211 SMART ring_2 111 152 IPR001841 -
Vian2g03119 211 FunFam E3 ubiquitin-protein ligase ATL6 80 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03119 Vian-Chr2 51803674 51804309 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03119 8 179 Rapid Response to Elicitors AT3G05200 32.086 3.12e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03119 K10664 - gmx:100804862 180.259