Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03116 ATGACGAGTTTCCATTCTAGAAAACTATGTTTTCCCTTTCATGGCTCAATCGATGTTGCTACCATGAATAGGAGAATCAGAACCAGTTACAGTCCAATACCTTCTCCTCTTCCCTCAGTAGTTCCACGTTCATTTCCGTGGTTTCAACCACCCCTCCTTGATGGAGAACACGACCACCTAAACCTTGCATCCATCATTATAATCGGCCTAGGTAGCATAGCTTGTGTAATTATGTTTTTCCTCACCTTGTCCAAAATCCTAAAGATCTATTATTTAAATAGATACAACGTTAGCAGAAGAAACCCTCCAATATTATTTGACGTTCGAGGAGATTCTCCCTTTTCCGATGACGAGGAACATGAACATGTTATCAGGCAGCACTCCATACGGTTCAGCCCCACAGAGGGTCTCCAGCAATCAACCATAGACTCCATCACAGTATACAGATACAGAAATAACGAAGTTTTGGTTAAAGAAACTGAGTGTCTTGTTTGCCTCGGTGAGTTTCAACAAGAAGAGAGTCTGAGACTGTTGCCAAAGTGTAGCCATGCTTTCCACGTCCCTTGCATTGATACTTGGTTGAGGACACATAAAACCTGTCCCTTGTGCCGCACCCCTATTGTTCATGATGCTGTCAGTGTTGATGGTGAAACTGAGTCTGATTCAAGCGTTTCTGATATGATCCAGGACATGGAAGAATGCAATGGTAGTGGTGTTATGAGGGTTGGTGATGAAGATTCTAGTGGTGATGGAATTGAAATTTTGTCTGAATTTGGTAGTGGTGATTCTTCGGTTCCAATTAGTCGTGCTTCTGATGCTGCTACACAAGAATTTGATGATGAAAATGAACCCAAAATGAAGAGGTCTTTCTCGGTGGATTCATATGTTTTGTTTCTCCAATATACAAAGCTTAGACAGACCAAAATTGGTGATTGA 936 0.4167 MTSFHSRKLCFPFHGSIDVATMNRRIRTSYSPIPSPLPSVVPRSFPWFQPPLLDGEHDHLNLASIIIIGLGSIACVIMFFLTLSKILKIYYLNRYNVSRRNPPILFDVRGDSPFSDDEEHEHVIRQHSIRFSPTEGLQQSTIDSITVYRYRNNEVLVKETECLVCLGEFQQEESLRLLPKCSHAFHVPCIDTWLRTHKTCPLCRTPIVHDAVSVDGETESDSSVSDMIQDMEECNGSGVMRVGDEDSSGDGIEILSEFGSGDSSVPISRASDAATQEFDDENEPKMKRSFSVDSYVLFLQYTKLRQTKIGD 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03116 311 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Vian2g03116 311 Pfam Ring finger domain 161 204 IPR001841 -
Vian2g03116 311 SUPERFAMILY RING/U-box 150 210 - -
Vian2g03116 311 CDD RING-H2_EL5-like 161 204 - -
Vian2g03116 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 212 IPR013083 -
Vian2g03116 311 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 63 210 IPR044675 -
Vian2g03116 311 SMART ring_2 162 203 IPR001841 -
Vian2g03116 311 MobiDBLite consensus disorder prediction 259 285 - -
Vian2g03116 311 FunFam E3 ubiquitin-protein ligase ATL6 125 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03116 Vian-Chr2 51785265 51786200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03116 65 306 C3H Transcription Factor Family AT5G17600 33.206 1.13e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03116 - - vun:114181230 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03506 1 57612698 57613687 Vian2g03116 2 51785265 51786200 PCT