Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03114 ATGAAGAAATCTTTCTACCCTAACTCCTCCCCAATGTCTCACGGCACTCGTCCCCGCTTTGATTTTCACCCACAATGGAGGCCGCACTCACACCCACATGCACATGCCGCCCGCGTCCACCGTCCGCCGGAGCCTAATTTAAAGGTGAAGCCTTATTTCAAGGTGGTGCTCCGACTCGGCCTCCACCCTTCCAGCCGCGAGGACATCGAGGCCCTGATCAAAGACTGTGAGCACAAGGAACAGTCTTTTACCTTTTACCCCGAGGACGAGGTCGCTGCCGTGCTCAGTTACAAGAATTGGGAGGAGGCGTGCGTTGCGGCCGCCTGGTTCTGGGAGACGCTGCTGTCGGAGAAGCACGATTATACGCCGGAGCTGGACTCCAACGCTTCGGTGACGGACAGTCTGGATGGTCGCCTTCGAGTGCTGTTCAGGAGGCACGTGATGAAGGTGATGGAGGGGAAGGAGGTTAAGCGGTGGGTGGAGGAGAGTAAAAGGTTGTCGAAAGAAATTGAGAGGGTTTCTCGTTTGCTCAGGAATAAGCACTTGCATATGAGCTGGTATAACCGCTATATTGACCAGAGGAAAGGGCTCGTTGTTGAGAAAGACCAGGTTGAAAGGAGGTTGATGGAGTTCGACTCTGCGATGGATTGTATACTGAAGTATCTGGCGGAGGGCGCCGACATGGAGGGTGCCAACGTGGAGGGTAGTCGGAGTGTGAATGTGTTGGAGTTTGATGGATGTTGTGATTGGAAGCGCATTCACTGCCTGATCAGAAGGGAGTGTCGGAGACTGGAGGATGGATTGCCCATTTATGCTTACAGGAAGGATATTCTTCGGCAGATACATGAGCAGAAGATTGAGAGTGTTGTGGACAATTCCGCTGGATATTGTGGTCAAATGAGGCTGCGATTATGGAGTGAAATTGTTCACAAATGCTTTCGTATTTGTGGTTGTGTTGACCCCCCAAACATTGAACTTGCTCGGAAATTGTGGCCAAATGTGGTGAAATCTAATAACTTGATATCATATTCTATACTTGTCTGTGATGCTTATATATTTCTTGAAGTATATATACAGATGGTGGTATTAATTGGAGAGACTGGATCTGGTAAGAGTACACAGTTAGTTCAGTTTCTAGCTGATTCTGGCATTGGTGCTGATGAATCCATTGTATGCACCCAATCTCGCAAGATTGCTGCCAAATCAGTGGCTCAAAGGGTTCAGGAAGAAAGCAGCGGTTGTTATGAAGGGCAATCAATCACATGTTCTACGTTTTCATCCTTGAATGAGCTTGATTCCAGGATAATATTCACGACAGATCACTGTTTATTGCAGCACTACATGAGGAATGATAATTTGTCTGGGATCTCGTGCGTCATAGTTGATGAGGCTCACGAGAGGAGCTTAAATACAGATTTACTGATGACTTTGTTGAAGAATTTACTTTATAGGAGGGGTGAGATGCGGCTTATCATTATGTCTGCTACAGCTGATGCAAATCAGCTATCTGATTACTTTGATGGTTGTAGTATTTTTCGTGTGCAAGGGAGAAGTTTTCCAGTGGATATCAAATATGCTCCTCCTGACCATGCTGAGTATTCTGGTTCTTCTGTTGTTGCATTGGATGTTTTGGATGTTGTCAGAAAGGCAACAGAGGTTCACAGAACAGAGAAAGAGGGAACTATCCTTGCTTTTTTGACCTCTCAGATAGAAGTAGAATATGCCTGTGAGAAGTTTAAAATAATACCCTCTGCAGTTGCCCTGCCCTTACATGGAAAACTTTCATCTGATGAGCAATCTCGTGTTTTTCAGAACTACCCTGGAAAGCGAAAAGTGATATTTTCAACAAATCTTGCAGAGACATCACTGACAATTCCTGGTGTTAAATATGTGATTGATTCTGGTTTAGTTAAAGACTGCAGATATGATCCTGGCAGCGGGATGAATGTACTTAAGGTGTGCTGGATTAGTAAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACCGAACCTGGTGTGTGCTATAGGCTGTATTCAGAAACTGATTATCAATCAATGGACCTAAATCAAGAGCCAGAGATTCGGCGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTGGCTCTGAGAGTGAAGAATATTCAGGATTTTGATTTTGTGGATGCTCCAAGTTCTAGCTCTATTGATATAGCAGTCAGGAATCTAATTCAGTTAGGAGCAATTGAGATGAAAAACGATGGTCTTGATCTAACGCCAGAGGGTTGGTTCCTTGCCAAATTGGGAATTGAACCCAGGCTTGGTAAACTTATTCTTGGCTGTTACAAACATCGTTTGGGTAGGGAAGGTCTTGTTCTGGCTGCTGTGATGGCCAATGCTCGTACGATATTTTGTAGATTTGGCAGTGAATTTGAAAAACGAAGATCCGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGAGACCTCTTTACTCTTCTCTCCGTGTACAAGGAATGGGATGCTTTGCCTTGGGGAGAAAGGAAAGGATGGTGTTTCAGAAACAGCATCAATGCTAAGTCCATGAGGAGGTGCCAAGACACAATTTTGGAGTATGAAAGTTGCCTTGAGCGTGAACATAAAATTGTTATTCCGAGTTATTGGCATTGGGACCCTTATACACCCTCTAGTTATGACAAGAACTTGAAGAGGGTTATACTGTCCTCACTTGCTGAGAATGTAGCCATGTACTCTGGCTGCAATCAACTTGGTTATGAAGTGGCGCAAACTGGGCAACATGTTCAACTGCATCCATCATGTTCATTGCTTGTTTTTGCTCAGAAACCAAATTGGGTGGTTTTTGGTGAGATTCTTTCCATCTCTAATCAATATTTGGTCTGCGTGAGCACATTTGACTTTCAATCATTATATGACCTTTGCCCAGCTCCCTTGTTTGATGTATCTAAAATGGTGGAGGGGAAGTTGCAAATGAAGACATTGTGTGGTCTTGGCCGTATTGTTCTCAAGAAATTTTGTGGAAAAGCCAACTGTAATTTGTTCGCTCTTGTTTCGCGTATAAGGAAAGCTTGTTCAGAGGAACGTATCTACATTGAAGTGAATGTTGACCAGAATGCAGTCCACTTATTTGCCACTTCAAATAATATGGATACAGCCCTTGCGTTGGTTAATGGCGCTCTAGAATTTGAGAGAAAGTTCTTACGTGCTGAATGTATTGATAAGTTTTTGTATCATGGGTCTGGTCCTTCACCTATCGCTTTGTTTGGGTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGAGGTATGTCATGCAAACATAAATGCAATTGATGACAAGGAGCTCTTAATGTTTTTAGAGAAGAATACCTCTGGTAGTATCTGTGCTGTTCACAAATCTGCAGGCAATATGAAGGATGAAGATAAGGAAAGGTGGGGCAGGATAACTTTTACATCCCCTGAATTTGTCAAAAGAGCCACTGAATTAGATGGACATGAGTTTTGTGGCTCCTCCTTGAAAATTTTCCCTTCGCAGTTGGGAGGGGATAAAACATTTTCGTACACTGATGTTAAAGCAAAAATTTGTTGGCCTCGTAGGATTAGCAGGGGATTTGCCGTAGTTAAATGTGATATAAAGGATGTCAATGATATATTGAGAGATTTCTACAACCTTGCAATAGGGGGAAGGTATGTTAGATGTGAAGTTGGCAAAAAGAGTATGGACAGTGTTGTTATAAATGGGCTTGGCAAAGACCTCTCGGAAGCTGAAATACTGGATGTGCTAAGAACTGCTACAAACAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGGGATGCGGTTGAAAACCCACCATGCAGTGTTTTGGAAGAGGCACTCTTGAAGGCAATTTACCCCTCTTTGCCCAAAAGGAACCCGCACTTTAGTTCTTGCCGAGTTCAGGTGTTTGTACCTGGGCCTAGGGATGCCTTTATGACAGCTTTAATCAGTTTCGATGGAAGATTGCATTTAGAGGCAGCAAAAGCTTTGGAGCATATTGAAGGAAAGGTGTTACCTGGATGTCTATCATGGCAAAAGATAAAGTGCCAGCGGTCGTTTCAAAGCTCCTTGATATTTCCAGCACCAGTGTTTCGTGTGATTAGGGAACAACTGGGTGGAGTACTTGCAAGCTTCAAGAATTTAAGAGGTCTTGAGATCGAGGAGGACAGGACATTTAATGGTTCCCACCGAGTCAAGATAACTGCGAACGCCACAAGGACAGTGGCAGATGTCAGAAGACCTCTGGAAGAACTATTGAGAGGGAAAACCATTGAGCATGACAGTCTCACTCCTGCAGTTCTCCAGCTCATGATGTCCAAGGATGGCTTTAATCTTAAAAACTCATTGGAGCAGGAGACAGGAACTTATATTCTTTTTGACAGGCACAACTTGAATTTACGTGTGTTTGGTTCCCCAAACAAGGTTGCTTTGGCTCATGACAAGGTGATTCAATCCCTCCTTTCTCTACATGAAGAAAAGCAGTTAGAAGTCCATCTGAGAGGGAGGGATTTACCTCCTGATTTAATGAAGCAAGTGATTAAGAACTTTGGACCGGATCTGCATGGACTGAAAGAAAGGGTGCCTGGAGTAGATCTTAAGCTCAACATAAGACGCCATGTAATCAGTCTTAATGGTAGGAAGGAGTTGAAAACCAGGGTAGAGGAAATAATTTTTGAGATTGCTCGTTCATGCCATCATTTGGTTGGGACGTTTGCTAATGATGGTCCTAATTGCCCGATTTGCTTGTGCGAGGTTGAGGATCCATTCCAGCTTGAAGGCTGTGGTCATTTGTTCTGCCGGTTGTGTCTGGTGGAACAATGTGAATCTGCTATTAAAAACCAAGGCACCTTCCCAATATGTTGTACTCACAAGGACTGTGGAGATGTTATCCTGCTTACAGATCTGAGATCTCTCTTATTTAGTGATAAATTGGAGGAACTTTTCAGGGCTTCTTTGGGAGCTTTCGTGACTACGAGTGGGGGAACTTACAGGTTTTGCCCTTCTCCAGACTGCCCCTCAATTTATCGAGTTGCAGATCCTGGGACTGCTGGCGAGCTATTTGTTTGTGGGGCGTGTTATTCAGAGACATGTACCAGGTGCCACTTAGAGTATCATCCTTACCTTTCATGCGAGAGATATAAAGAGTTCAAGGAAGATCCGGATTCATCTCTGATGGAGTGGCGCAGAGGCAAGGACGACGAAGTTAAGAGTTGCTTGGCGTGTGGGCATGTAATTGAGAAGGTGGATGGGTGCAACCATGTGGAGTGCAAGTGTGGAAAGCATGTGTGTTGGGTTTGCTTAGAGTTCTTCGGTGGTAGTGATGAATGTTATAGCCATTTGAGAAATGTGCACACGACTATAATATAA 5421 0.4409 MKKSFYPNSSPMSHGTRPRFDFHPQWRPHSHPHAHAARVHRPPEPNLKVKPYFKVVLRLGLHPSSREDIEALIKDCEHKEQSFTFYPEDEVAAVLSYKNWEEACVAAAWFWETLLSEKHDYTPELDSNASVTDSLDGRLRVLFRRHVMKVMEGKEVKRWVEESKRLSKEIERVSRLLRNKHLHMSWYNRYIDQRKGLVVEKDQVERRLMEFDSAMDCILKYLAEGADMEGANVEGSRSVNVLEFDGCCDWKRIHCLIRRECRRLEDGLPIYAYRKDILRQIHEQKIESVVDNSAGYCGQMRLRLWSEIVHKCFRICGCVDPPNIELARKLWPNVVKSNNLISYSILVCDAYIFLEVYIQMVVLIGETGSGKSTQLVQFLADSGIGADESIVCTQSRKIAAKSVAQRVQEESSGCYEGQSITCSTFSSLNELDSRIIFTTDHCLLQHYMRNDNLSGISCVIVDEAHERSLNTDLLMTLLKNLLYRRGEMRLIIMSATADANQLSDYFDGCSIFRVQGRSFPVDIKYAPPDHAEYSGSSVVALDVLDVVRKATEVHRTEKEGTILAFLTSQIEVEYACEKFKIIPSAVALPLHGKLSSDEQSRVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDCRYDPGSGMNVLKVCWISKSSADQRAGRAGRTEPGVCYRLYSETDYQSMDLNQEPEIRRVHLGVAVLRILALRVKNIQDFDFVDAPSSSSIDIAVRNLIQLGAIEMKNDGLDLTPEGWFLAKLGIEPRLGKLILGCYKHRLGREGLVLAAVMANARTIFCRFGSEFEKRRSDCLKVQFCHCDGDLFTLLSVYKEWDALPWGERKGWCFRNSINAKSMRRCQDTILEYESCLEREHKIVIPSYWHWDPYTPSSYDKNLKRVILSSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPNWVVFGEILSISNQYLVCVSTFDFQSLYDLCPAPLFDVSKMVEGKLQMKTLCGLGRIVLKKFCGKANCNLFALVSRIRKACSEERIYIEVNVDQNAVHLFATSNNMDTALALVNGALEFERKFLRAECIDKFLYHGSGPSPIALFGSGAEIKHLELEKRSLSVEVCHANINAIDDKELLMFLEKNTSGSICAVHKSAGNMKDEDKERWGRITFTSPEFVKRATELDGHEFCGSSLKIFPSQLGGDKTFSYTDVKAKICWPRRISRGFAVVKCDIKDVNDILRDFYNLAIGGRYVRCEVGKKSMDSVVINGLGKDLSEAEILDVLRTATNRRILDFFLVRGDAVENPPCSVLEEALLKAIYPSLPKRNPHFSSCRVQVFVPGPRDAFMTALISFDGRLHLEAAKALEHIEGKVLPGCLSWQKIKCQRSFQSSLIFPAPVFRVIREQLGGVLASFKNLRGLEIEEDRTFNGSHRVKITANATRTVADVRRPLEELLRGKTIEHDSLTPAVLQLMMSKDGFNLKNSLEQETGTYILFDRHNLNLRVFGSPNKVALAHDKVIQSLLSLHEEKQLEVHLRGRDLPPDLMKQVIKNFGPDLHGLKERVPGVDLKLNIRRHVISLNGRKELKTRVEEIIFEIARSCHHLVGTFANDGPNCPICLCEVEDPFQLEGCGHLFCRLCLVEQCESAIKNQGTFPICCTHKDCGDVILLTDLRSLLFSDKLEELFRASLGAFVTTSGGTYRFCPSPDCPSIYRVADPGTAGELFVCGACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLMEWRRGKDDEVKSCLACGHVIEKVDGCNHVECKCGKHVCWVCLEFFGGSDECYSHLRNVHTTII 1806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03114 1806 SMART ibrneu5 1729 1794 IPR002867 GO:0008270
Vian2g03114 1806 SMART ibrneu5 1663 1728 IPR002867 GO:0008270
Vian2g03114 1806 MobiDBLite consensus disorder prediction 1 15 - -
Vian2g03114 1806 Pfam DEAD/DEAH box helicase 359 500 IPR011545 GO:0003676|GO:0005524
Vian2g03114 1806 Gene3D - 518 691 IPR027417 -
Vian2g03114 1806 ProSiteProfiles Zinc finger RING-type profile. 1596 1638 IPR001841 -
Vian2g03114 1806 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 518 691 - -
Vian2g03114 1806 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1591 1673 - -
Vian2g03114 1806 Gene3D - 716 822 - -
Vian2g03114 1806 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 457 466 IPR002464 -
Vian2g03114 1806 SUPERFAMILY RING/U-box 1679 1734 - -
Vian2g03114 1806 ProSitePatterns Zinc finger RING-type signature. 1612 1621 IPR017907 -
Vian2g03114 1806 CDD SF2_C_RHA 519 680 - -
Vian2g03114 1806 Gene3D - 1724 1804 - -
Vian2g03114 1806 SMART ultradead3 336 524 IPR014001 -
Vian2g03114 1806 CDD DEXHc_RHA-like 359 514 - -
Vian2g03114 1806 MobiDBLite consensus disorder prediction 1 23 - -
Vian2g03114 1806 Pfam Helicase conserved C-terminal domain 554 671 IPR001650 -
Vian2g03114 1806 SUPERFAMILY RING/U-box 1743 1799 - -
Vian2g03114 1806 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 352 515 IPR014001 -
Vian2g03114 1806 SMART ha2_5 732 828 IPR007502 GO:0004386
Vian2g03114 1806 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 542 712 IPR001650 -
Vian2g03114 1806 ProSiteProfiles TRIAD supradomain profile. 1592 1801 IPR044066 -
Vian2g03114 1806 ProSitePatterns Zinc finger C2H2 type domain signature. 1781 1802 IPR013087 -
Vian2g03114 1806 SMART helicmild6 573 672 IPR001650 -
Vian2g03114 1806 CDD BRcat_RBR 1680 1731 - -
Vian2g03114 1806 FunFam RBR-type E3 ubiquitin transferase 715 821 - -
Vian2g03114 1806 CDD Rcat_RBR_DEAH12-like 1753 1802 - -
Vian2g03114 1806 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1724 1803 - -
Vian2g03114 1806 Coils Coil 156 176 - -
Vian2g03114 1806 Pfam Helicase associated domain (HA2) 733 827 IPR007502 GO:0004386
Vian2g03114 1806 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 896 975 IPR011709 -
Vian2g03114 1806 Gene3D - 257 517 IPR027417 -
Vian2g03114 1806 Pfam IBR domain, a half RING-finger domain 1673 1728 IPR002867 GO:0008270
Vian2g03114 1806 PANTHER ATP-DEPENDENT RNA HELICASE 257 966 - -
Vian2g03114 1806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1593 1672 IPR013083 -
Vian2g03114 1806 SUPERFAMILY RING/U-box 1594 1658 - -
Vian2g03114 1806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 836 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03114 Vian-Chr2 51774975 51781715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03114 1612 1798 ARIADNE family AT3G27710 29.474 5.49e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03114 K12818 - gmx:100810008 2435.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03114 2 51774975 51781715 Vian2g03114 2 51774975 51781715 ECH