Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03112 ATGAAGAGACTTAGCAGTTCAGATTCTTCTTCCACTCCCCTGATCACAGTTTGTCCATCAACAGAGGAACACAGTACGAGAAACTGCCAACAGCACGTGTATGGTAGGGAGTTCCAATCGATGATGCTTGAGGGGCTTGACGAGGAAGGGTGTGTTGAAGAAGTGGGACATCAATCTGAGAAAAAACGGCGACTGAGTGTAGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAACTTGCCCAAGAACTTGGGCTGCAACCTAGACAAGTAGCTGTCTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTCCTCAAAGCCAATTTTGATGCCCTCAAGCTTAACTATGACACCCTCAATCACGACAACGAAGCTTTACGGAAGCAGATAAAGGAACTGAAATCGAGGCTGGAGGAAGAGAACACTGGAAGCGGTGTTTCCGTGAAGGAGGAGATAATGATGCCTGACTCGGACGACAAAACAACGATGGAACAACAAAGTAAGAGCGAGCCTAGTTCGGAATCCGAGGATCAGTTGAACTACGAGTGTTTAAACAACAACAAGAACAGTGCTTGTTTCGGAGGCGCTTCGCTCTTCCCAGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCGATCTTGAACGAAGAGAACCACTGCAGCCCCATAACCGAACATCTCTTGCTGTCACCGGAATCTTCCTCGATGAACTGTTTGCAGTTTCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAACTTCTTCAGCGCCGATGAGGCCTGCAATTTCTTTTCTGATGAACAAGCTCCGACGTTGCAGTGGTGGAGCTGA 909 0.4818 MKRLSSSDSSSTPLITVCPSTEEHSTRNCQQHVYGREFQSMMLEGLDEEGCVEEVGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKSRLEEENTGSGVSVKEEIMMPDSDDKTTMEQQSKSEPSSESEDQLNYECLNNNKNSACFGGASLFPVDFKDGSSDSDSSAILNEENHCSPITEHLLLSPESSSMNCLQFQKAYQAQYVVKMEEHNFFSADEACNFFSDEQAPTLQWWS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03112 302 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Vian2g03112 302 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Vian2g03112 302 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Vian2g03112 302 MobiDBLite consensus disorder prediction 1 22 - -
Vian2g03112 302 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Vian2g03112 302 MobiDBLite consensus disorder prediction 156 199 - -
Vian2g03112 302 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Vian2g03112 302 SUPERFAMILY Homeodomain-like 46 118 IPR009057 -
Vian2g03112 302 SMART HOX_1 59 120 IPR001356 GO:0003677
Vian2g03112 302 FunFam Homeobox-leucine zipper protein HAT5 54 118 - -
Vian2g03112 302 Gene3D - 55 123 - -
Vian2g03112 302 Pfam Homeobox associated leucine zipper 116 157 IPR003106 GO:0006355|GO:0043565
Vian2g03112 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 275 IPR045224 GO:0003700
Vian2g03112 302 Coils Coil 129 163 - -
Vian2g03112 302 CDD homeodomain 61 117 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03112 Vian-Chr2 51724308 51725791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03112 1 302 Homeobox Transcription Factor Family AT2G22430 48.447 1.75e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian2g03112 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03112 K09338 - gmx:100777924 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03508 1 57691207 57692583 Vian2g03112 2 51724308 51725791 PCT