Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03098 ATGCAAAACTTAAGTGTTGCCTATCGTCTACGAGAACTCAGACCTGGGGAACCCGTTTTGGATTGGCCTACTAGAAAACGAGTTGCTCTAGGAACAGCCCGCGGCCTAGAATATCTTCACGAGCAGTGTAATCCTAGGATTATTCATAGGGATGTGAAGGCAGCTAATATATTACTAGATGGAGATTTTGAACCAGTTGTTGGTGACTTTGGTTTGGCAAAATTAGTTGATGTTCGAAATACTACTGTGACAACTCAAGTTCGTGGGACAATGGGTCATATAGCTCCAGAATACTTGTCCACAGGAAAATCTTCAGAAAGGACTGATATTTTTGGTTATGGGATTATGCTTTTGGAACTTGTTACAGGTCAACGTGCTATTGACTTTTCACGTTTGGAAGAGGAGGATGACGTGTTATTGCTTGACCATGTTAAGAAACTGCAACGGGAGAAAAGACTAGATGTTATTGTGGACTGCAACCTAAAGAAAAACTACGTAATAGGAGAGGTTGAAATGATTGTACAAATTGCATTACTCTGCACACAAGCATCTCCGGAAGATCGACCAGCAATGTCAGAAGTTGTAAGAATGTTAGAGGGAGAAGGGCTTGCTGAAAGATGGGAAGAATGGCAGCATGTGGAGGTTGCTACGAGGGAAGATTACGAGAGACTACAAAGAAGAATGAACTGGGGAGAAGATTCAATGAATAACCAAGATGCCATTGAGTTGTCAGGTGGAAGATAA 744 0.418 MQNLSVAYRLRELRPGEPVLDWPTRKRVALGTARGLEYLHEQCNPRIIHRDVKAANILLDGDFEPVVGDFGLAKLVDVRNTTVTTQVRGTMGHIAPEYLSTGKSSERTDIFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLQREKRLDVIVDCNLKKNYVIGEVEMIVQIALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVATREDYERLQRRMNWGEDSMNNQDAIELSGGR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03098 247 FunFam Somatic embryogenesis receptor-like kinase 1 1 218 - -
Vian2g03098 247 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 209 - -
Vian2g03098 247 SUPERFAMILY Protein kinase-like (PK-like) 6 199 IPR011009 -
Vian2g03098 247 Gene3D Transferase(Phosphotransferase) domain 1 1 218 - -
Vian2g03098 247 Pfam Protein kinase domain 24 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g03098 247 SMART serkin_6 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g03098 247 ProSiteProfiles Protein kinase domain profile. 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g03098 247 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03098 Vian-Chr2 51575174 51577131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03098 1 247 Receptor kinase-like Gene Family AT5G10290 82.996 1.33e-149 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vian2g03098 Pkinase 1.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03098 - - gmx:100786654 448.358