Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03095 ATGCCCAATTCCAACTCCAACCCAAACGCAGATCCGACCCTAAATTTTAACACCCAGGATCCGAATGTAACTGCTAACCCTCAGCTTCCGCTTCAGAACCTCTCCCAGGTTCGGGCAAGAATTGATTCTCTGCAGCACTTCCTATCTCAATCCATCAGCACCAGCACTCCTCTCACCACCGATCAAATTGCTATGGTCTCCACCCACATCATCTCATCCATCCACCAAATCATCGTCAACGGTGCCGCCCTCGTAACTTACTCCCAACATTCCACCGCCGCGGTCACACCAGATGCGTCGTCGTATCCGAAGCCGGAACATTCCGCCACCGATAAACACAAGCAACTCCTCGATTCCAAACTCGAACCTCCCGAGGACGGTGACGGCGTCGAAGACGACGATTGCGAAATCGTGGAGCTCGACGCCGTGGAACTCCTCGCGGAGCACATCCACTTCTGCGAGATCTGCGGGAAAGGATTCCGGCGCGACGCGAATCTCCGCATGCACATGCGAGCGCACGGAGATCAGTTCAAGACGCCGGAGGCACTGGCGAGGCCGTCAGAAACCGGCTCGGCGAAGGGCGCGATGCGGTTCTCTTGTCCGTTCGAAGGCTGCAACCGGAACAAACTACACCAGCGGTTTCGGCCGCTGAAGTCGGCGTTGTGCTTGAAGAACCACTTCAAGCGCAGCCACTGTCCAAAGATGTACTCGTGCACCCGGTGCAACAAGAAGCACTTCTCGGTGCTTTCGGATTTGAAAAGCCACGTGAAGCACTGCGGAGAGTGCCGGTGGAAGTGCACGTGCGGGACCAGGTTCTCGAGGAAGGACAAGTTGTTCAGCCACATTGCGCTGTTTGAGGGCCACGCGCCTGCGCTCGCGTGCGACGAAGAGGATAAAGGGAAGCAAGTGGCGGAGGGTGATGACGAAAATCCAATGTTGACGACTGACAGTGGATTTGAATTGGATAATTGCTTTGGGGATGAGGAGTTGCCGGAAGGGTTTTTCGATGATTTTGGGTCCATTGATGACTACAGTTTAGAGGAAGTGCTAGGCTTTCTGAGTAATTGA 1068 0.5478 MPNSNSNPNADPTLNFNTQDPNVTANPQLPLQNLSQVRARIDSLQHFLSQSISTSTPLTTDQIAMVSTHIISSIHQIIVNGAALVTYSQHSTAAVTPDASSYPKPEHSATDKHKQLLDSKLEPPEDGDGVEDDDCEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALARPSETGSAKGAMRFSCPFEGCNRNKLHQRFRPLKSALCLKNHFKRSHCPKMYSCTRCNKKHFSVLSDLKSHVKHCGECRWKCTCGTRFSRKDKLFSHIALFEGHAPALACDEEDKGKQVAEGDDENPMLTTDSGFELDNCFGDEELPEGFFDDFGSIDDYSLEEVLGFLSN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03095 355 MobiDBLite consensus disorder prediction 1 26 - -
Vian2g03095 355 Pfam Zinc finger, C2H2 type 152 173 IPR013087 -
Vian2g03095 355 SUPERFAMILY beta-beta-alpha zinc fingers 148 174 IPR036236 -
Vian2g03095 355 MobiDBLite consensus disorder prediction 95 131 - -
Vian2g03095 355 FunFam Zinc finger 45-like 148 174 - -
Vian2g03095 355 SMART c2h2final6 198 231 IPR013087 -
Vian2g03095 355 SMART c2h2final6 236 258 IPR013087 -
Vian2g03095 355 SMART c2h2final6 260 288 IPR013087 -
Vian2g03095 355 SMART c2h2final6 151 173 IPR013087 -
Vian2g03095 355 MobiDBLite consensus disorder prediction 105 124 - -
Vian2g03095 355 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 110 305 IPR044300 GO:0010044|GO:0010447
Vian2g03095 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Vian2g03095 355 Gene3D Classic Zinc Finger 151 174 - -
Vian2g03095 355 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Vian2g03095 355 Gene3D Classic Zinc Finger 224 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03095 Vian-Chr2 51561640 51562707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03095 125 296 C2H2 Transcription Factor Family AT1G34370 57.627 2.46e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g03095 zf-C2H2 0.00024 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03095 - - gmx:100796506 516.924