Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03065 ATGACACCTCTCTCAAAGCTCTTTCACAAGTTCTGTGCGGAAATTATAATCATATTAGCATCCCTGATAATAGAACTTATCATTCTGATTCAGAAACTAAAATCATCGCCACGCCCAATCAGCACCCAGCAATACCTGAAATTCATCGAGAAGAAGAACCCCACGATTTGCTACACGAAGGGGTTGTCGAAGGCGGAACAGGGTGGTGCTGCAGAGTGTAGGGTATGCCTGTGCGAATTGGAGGAAGGGGAGAAGGTGAGGAAGCTGCAATGCCGTCACGTGTTTCACAGGGATTGTTTGGACAAGTGGTTGCAACAATATTGGGCCACGTGTCCTCTTTGTCGGAAACAAGTGGTGCCGGAAGATGTCGTGTTCAAGCACCGTCAGCATCAGAATCAAACAGAGGGAGGTTTTGATCGGAATCATGATGACAACCTTCCCTACTTTTTATCAGCATTTCGTCGTGGCAACACTCTGCACAGATATTTCTGA 492 0.4654 MTPLSKLFHKFCAEIIIILASLIIELIILIQKLKSSPRPISTQQYLKFIEKKNPTICYTKGLSKAEQGGAAECRVCLCELEEGEKVRKLQCRHVFHRDCLDKWLQQYWATCPLCRKQVVPEDVVFKHRQHQNQTEGGFDRNHDDNLPYFLSAFRRGNTLHRYF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03065 163 CDD RING-H2_PA-TM-RING 72 115 - -
Vian2g03065 163 SMART ring_2 73 114 IPR001841 -
Vian2g03065 163 SUPERFAMILY RING/U-box 54 121 - -
Vian2g03065 163 PANTHER - 1 158 - -
Vian2g03065 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 120 IPR013083 -
Vian2g03065 163 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Vian2g03065 163 Pfam Ring finger domain 72 115 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03065 Vian-Chr2 51257196 51257687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03065 71 126 C3H Transcription Factor Family AT1G15100 58.929 2.30e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03065 K16282 - gmx:102661897 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03577 1 58476768 58477256 Vian2g03065 2 51257196 51257687 PCT