Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03047 ATGGTTTCTAAAGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTCTTACTAACTCTCATGCACTAAACAAAACCTCGATCATAATAGATGCGTCAAAGTATATCCAGGAATTAAAGCAAAAGGTGGAAGAACTGAATCAAGACTTAGCCAATGCACAAACTTCAACTGGCCAAAATACTTTGCCTATGGTTACAGTAGAAACCACGGAGAAGGGCTTTGTTATTAATGTTTTTTCAGCAAAGAGTTGTCCTGGTCTGTTTGTTTCCATATTGGAGTCATTTGAAGAGATGAGTCTGAATGTGCTTGAAGCTAGGGCTACTTGTACAGACACTTTTCGATTTCATGCTGTTGGAGGAAAAAACGAAGAAGAAGGTAAGAATATTGATGCACGAGCTGTGAAACAGGCAATGGGACAAGCAATAAAGAATTGGAGCCAAAATGCTGACCAAAAGTAA 471 0.3949 MVSKEQKRAALHEKLQLLRSLTNSHALNKTSIIIDASKYIQELKQKVEELNQDLANAQTSTGQNTLPMVTVETTEKGFVINVFSAKSCPGLFVSILESFEEMSLNVLEARATCTDTFRFHAVGGKNEEEGKNIDARAVKQAMGQAIKNWSQNADQK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03047 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 151 - -
Vian2g03047 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 64 IPR036638 GO:0046983
Vian2g03047 156 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03047 Vian-Chr2 51131494 51132848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03047 1 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 28.188 5.05e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03047 - - gmx:100814138 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03047 2 51131494 51132848 Vian7g01513 7 23939081 23940460 ECH
Vian2g00845 2 12840102 12841344 Vian2g03047 2 51131494 51132848 ECH
Vian6g00691 6 23702128 23702961 Vian2g03047 2 51131494 51132848 ECH
Vian2g03047 2 51131494 51132848 Vian2g03047 2 51131494 51132848 ECH
Vian2g03047 2 51131494 51132848 Vian7g01513 7 23939081 23940460 PCT