Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03031 ATGGATTCCGACTTCCCGAACAAAGCGTTGACGAGCACGCGTTTTTCCGACCTAAATCCGCCCCTTTCCGACCCCGTTCTCCAAGCCCTATCACAATCTGGCTTCGACTTCTGCACGCCGGTCCAAGCCGCCACCATTCCTTTGCTCTGCAGCTTCAAAGACGTTGCCGTTGACGCCGCCACCGGTTCTGGAAAAACCCTAGCCTTTGTCATCCCTCTCGTTGAGATTCTGCGCCGGTCCTGCTCTCATTCCAAGCCTCACCAGACAAATGTGGTCAATGCGGTTGCACACTCAGGCTCTAGAAACCTTGATGTTGTGCTAGGGATAATTATATCTCCTACAAGGGAGCTTTCAACCCAAATATATAATGTGGCACAACCATTCATTTCGACATTGGTGAATGTTAAGTCCATACTCCTCGTTGGTGGAGCGGAAGTAAAAGCAGACATAAAGAAAATAGAGGAGGAAGGAGCAAACATATTGATCGGCACGCCTGGGCGGTTATATGACATAATGAATCGGATGGATGTCTTGGATTTTAAAAACTTCGAGATTTTGATTTTGGATGAGGCTGATAGACTCCTAGATATGGGATTCCAGAAGCAGATAACTTCTATTATATCTCAATTGCCTAAGCTTCGTAGAACTGGTCTATTTTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTTCTAAGGCAGGACTGAGAAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACTAAATCAGAAAATGATCTTGTGTCATCAGAACAGCCAGAATCTTCAAAAACACCTTCAGGACTTCACATTGAGTACTTGGAATGCGAGGAAGATAAGAAGCCATCACAGCTAATAGATATTCTTATTAAAAACCGCTCAAGAAAAATTATAATATATTTCATGACTTGTGCTTGCGTTGATTATTGGGGAACTGTCCTTCCTTGTCTTTCTGTTTTGAAAGGTTTCTCCTTGATTCCCCTACATGGAAAGATGAAGCAGTCTTCAAGGGAGAAAGCACTGGCTACATTTACATCCCTTTCAAATGGAATTCTGCTATGTACGGATGTTGCTGCGCGAGGACTAGACATACCAGGCGTTGATTGTATAGTGCAGTATGATCCCCCTCAAGATCCAAATGTTTTTGTACATAGAGTTGGTCGAACTGCTCGGCTGGGTAAACAGGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAATCCCTCTCCATGAGAGAATATGTTCTGATGGTGCATTGGATGTTGTTCCTCAGATTCGTTCTACTGCAAAAAAAGATCGTGATATCATGGAGAAAGGAATTAAGGCTTTTGTCTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTTAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGATATGGCTTATTACAACTTCCTTCAATGCCAGAGGTAAAACATCACTCACTTTCCACTGACGGATTTGAACCAGTTAAAGATATCAATTTCGAGGACATTAAGTACAGGGATAAATCACGGGAGAAACAAAGAAAGAAGAACCTACAAGCAAAGAAAGAAGCCAAAGAGAAAGAACCAAAACCTCAAAAACCAAAGAAAACCCCAGATGCTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCAGCAGACAATAGAAGACGAGGAGGAGTTGATGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGACGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAATTACTTTGA 1815 0.4275 MDSDFPNKALTSTRFSDLNPPLSDPVLQALSQSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVIPLVEILRRSCSHSKPHQTNVVNAVAHSGSRNLDVVLGIIISPTRELSTQIYNVAQPFISTLVNVKSILLVGGAEVKADIKKIEEEGANILIGTPGRLYDIMNRMDVLDFKNFEILILDEADRLLDMGFQKQITSIISQLPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENDLVSSEQPESSKTPSGLHIEYLECEEDKKPSQLIDILIKNRSRKIIIYFMTCACVDYWGTVLPCLSVLKGFSLIPLHGKMKQSSREKALATFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRIPLHERICSDGALDVVPQIRSTAKKDRDIMEKGIKAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMPEVKHHSLSTDGFEPVKDINFEDIKYRDKSREKQRKKNLQAKKEAKEKEPKPQKPKKTPDAVMRKKTARQRRAQQTIEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03031 604 SMART helicmild6 310 392 IPR001650 -
Vian2g03031 604 SMART ultradead3 34 271 IPR014001 -
Vian2g03031 604 Pfam Domain of unknown function (DUF4217) 433 491 IPR025313 -
Vian2g03031 604 MobiDBLite consensus disorder prediction 246 265 - -
Vian2g03031 604 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 241 IPR014001 -
Vian2g03031 604 CDD SF2_C_DEAD 271 401 - -
Vian2g03031 604 CDD DEADc_DDX55 26 241 - -
Vian2g03031 604 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 283 439 IPR001650 -
Vian2g03031 604 Gene3D - 270 504 IPR027417 -
Vian2g03031 604 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Vian2g03031 604 Pfam DEAD/DEAH box helicase 39 229 IPR011545 GO:0003676|GO:0005524
Vian2g03031 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 411 IPR027417 -
Vian2g03031 604 Pfam Helicase conserved C-terminal domain 280 392 IPR001650 -
Vian2g03031 604 PANTHER RNA HELICASE 12 537 - -
Vian2g03031 604 Coils Coil 554 581 - -
Vian2g03031 604 MobiDBLite consensus disorder prediction 518 572 - -
Vian2g03031 604 Coils Coil 520 540 - -
Vian2g03031 604 Gene3D - 3 244 IPR027417 -
Vian2g03031 604 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Vian2g03031 604 SMART DUF4217_3 430 493 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03031 Vian-Chr2 50981864 50986388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03031 22 431 Eukaryotic Initiation Factors Gene Family AT3G13920 27.737 1.93e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03031 K14809 - gmx:100801482 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03031 2 50981864 50986388 Vian2g03031 2 50981864 50986388 ECH