Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03029 ATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTTCTCAGACGCAGGTGTACCAAGGACTGCATCTTTGCTCCTTATTTCCCTTCCAATGACCCTCAAAAGTTCGCCTTAGTTCACAAGGTTTTTGGCGCTAGCAATGTTAGCAAAATGCTGCAGGAACTTCCTATTGAGCAGAGAGCAGATGCTGTGAGTAGTTTGGTGTACGAAGCACATGCAAGAGTTCGGGACCCTGTGTATGGCTGTGTTGGGGCCATATCCTATTTACAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACAGGAGCCAGTGATGCCAAATCCAGAAATGGAAAACCCAGATCAGAAATCTTACCTTCTCCAGAATGAACTCCCTCAGTTTCTCAACTATGCCTCTTCTAGCAATGTAATTTATGATGCTGTCTCAAGAGACAACATTTATGGACATGATATGGTTTCCTGA 498 0.4518 MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIEQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEPVMPNPEMENPDQKSYLLQNELPQFLNYASSSNVIYDAVSRDNIYGHDMVS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03029 165 Coils Coil 85 105 - -
Vian2g03029 165 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vian2g03029 165 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Vian2g03029 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03029 Vian-Chr2 50958202 50958939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03029 3 117 AS2 family AT2G30130 86.957 1.73e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian2g03029 LOB 2.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03029 - - gmx:121173085 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03029 2 50958202 50958939 Vian7g01534 7 24149674 24150377 ECH
Vian2g03029 2 50958202 50958939 Vian2g03029 2 50958202 50958939 ECH
Vian2g03029 2 50958202 50958939 Vian7g01534 7 24149674 24150377 PCT