Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03028 ATGCTTCTAAGAACCGCTTCTTCTTTCTCTCTGGTCAACGCCAACGCCAACGCCAACGCCGACGCCGACCATATACTCCCTCTGATAAACCCTTCTTCTGCTATTCGCTGCTATTCTCATGCCAAAAGCTTCGTTCCCTGCGCCACCAAGGGCTCAAACAACCGTCCCTTAACCGGCGTCGTTTTTGAACCCTTTGAAGAGGTCAAGAAGGAGCTCGACCTTGTTCCCACACTTCCAGAAGCTTCCCTTGCTCGCCAGAAGTACACCAATGAGAGTGAAGCTGTTGTCAACGAACAGATCAATGTGGAGTACAATGTTTCGTATGTTTATCATGCGATGTTTGCCTACTTCGACAGGGACAATGTTGCGCTAAAGGGTCTTGCCAAATTTTTTAAGGAGTCAAGTGAGGAGGAAAGGGAGCATGCTGAGAAATTGATAGAATATCAGAACAAACGTGGTGGAAAAGTGAAGTTGCAATCTATTGTGATGCCTCTTTCTGAGTTTGACCATGAGGAAAAGGGAGATGCCCTGTATGCAATGGAACTTGCTCTGTCTTTGGAGAAGCTGACAAATGAGAAGCTTCTTAACTTGCACAGTGTTGCCTCAAAGAACAATGATGTGCATTTGACAGATTTTATTGAAAGCGAATTTTTAGGTGAACAGAAACGAACCGAAGTAAGCATGGGTCCGAACCTGGAATGTCGTATGTACGAGGCGAAGTACCCGGAGGTGGACATGGCGGTGATGATACAGGTGAAGAACATCGCTGACATGGGTGCCTACGTGTCGCTTCTGGAGTACAACAACATCGAGGGCATGATCTTGTTCTCAGAGCTCTCCCGCCGTCGGATTCGGAGCGTCAGCAGCCTCATCAAGGTGGGGCGCATCGAACCCGTCGTGGTCCTCCGTGTCGACAAGGAAAAGGGCTACATCGATCTCAGCAAGCGCAGGGTCTCCGAAGAGGACATTCAGGCCTGCGAGGAGAGGTACAACAAGAGCAAGCTCGTCCATTCCATCATGCGCCACGTCGCCGAAACCCTAAACATCGATTTAGAGGACCTCTACATTCACATTGCATGGCCGTTGTATCGCAAATATGGTCATGCTTTTGAGGCTTTCAAAATAATTGTGACTGATCCTGATTCTGTTTTGAATACTCTCACCCGTGAGGTCAAGGAAGTTGGCCCTGATGGGCAGGAGGTAACTAAGGTAGTGCGAGCTGTTTCTGAAGAAGTGAAGGATTCTCTTGTGAAGAATATTAGAAGACGGATGACCCCCCAGCCCTTGAAAATTAGGGCGGATATTGAAATGAAATGTTTTCAATTTGATGGCGTTCTTCACATTAAGGAGGCAATGCGTAAAGCTGAAGCTGCTGGAAACGACGACTGCCCTGTCAAAATTAAACTTGTTGCTCCCCCACTTTATGTTCTTACCACTCAGACACTGGACAAGGAGCAAGGAATATTGGTTTTAAACAATGCCATTACCGCTTGCACTCGAGCAATAGAGCAACACAAGGGTAAACTTGTGGTTAAGGAAGGAGCTAGAGCAGTGAGTGAACGTGATGATAAATTGCTTGCTGAGCACATGGCCAAGTTACGCCAAGATAATGAGGAGGTAAGTGGTGATGAAGACAGTGAAGAGGAAGAAGATACAGGAATGGGTGAGGTTGATGTGGATAACGGTTCTGGGATAACAGAGTGA 1704 0.4724 MLLRTASSFSLVNANANANADADHILPLINPSSAIRCYSHAKSFVPCATKGSNNRPLTGVVFEPFEEVKKELDLVPTLPEASLARQKYTNESEAVVNEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLIEYQNKRGGKVKLQSIVMPLSEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSVASKNNDVHLTDFIESEFLGEQKRTEVSMGPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVVVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLNIDLEDLYIHIAWPLYRKYGHAFEAFKIIVTDPDSVLNTLTREVKEVGPDGQEVTKVVRAVSEEVKDSLVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGILVLNNAITACTRAIEQHKGKLVVKEGARAVSERDDKLLAEHMAKLRQDNEEVSGDEDSEEEEDTGMGEVDVDNGSGITE 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03028 567 Gene3D - 55 231 IPR012347 -
Vian2g03028 567 MobiDBLite consensus disorder prediction 540 556 - -
Vian2g03028 567 FunFam Eukaryotic translation initiation factor 2 subunit 1 429 551 - -
Vian2g03028 567 FunFam Eukaryotic translation initiation factor 2 subunit alpha 319 423 - -
Vian2g03028 567 Pfam Ferritin-like domain 96 226 IPR008331 GO:0008199
Vian2g03028 567 Gene3D Translation initiation factor 2; subunit 1; domain 2 319 423 IPR024054 -
Vian2g03028 567 ProSiteProfiles S1 domain profile. 245 316 IPR003029 GO:0003676
Vian2g03028 567 Gene3D EIF_2_alpha 429 551 IPR024055 -
Vian2g03028 567 SUPERFAMILY eIF-2-alpha, C-terminal domain 427 543 IPR024055 -
Vian2g03028 567 SUPERFAMILY Ferritin-like 80 229 IPR009078 -
Vian2g03028 567 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 228 557 IPR011488 GO:0003723|GO:0003743
Vian2g03028 567 Pfam S1 RNA binding domain 242 316 IPR003029 GO:0003676
Vian2g03028 567 MobiDBLite consensus disorder prediction 531 567 - -
Vian2g03028 567 Coils Coil 132 152 - -
Vian2g03028 567 ProSiteProfiles Ferritin-like diiron domain profile. 86 239 IPR009040 -
Vian2g03028 567 CDD S1_IF2_alpha 242 317 IPR044126 GO:0003723
Vian2g03028 567 FunFam Ferritin 55 227 - -
Vian2g03028 567 FunFam Eukaryotic translation initiation factor 2 subunit alpha 231 318 - -
Vian2g03028 567 Gene3D - 232 318 IPR012340 -
Vian2g03028 567 Coils Coil 530 550 - -
Vian2g03028 567 CDD Euk_Ferritin 90 229 - -
Vian2g03028 567 SUPERFAMILY eIF2alpha middle domain-like 318 423 IPR024054 -
Vian2g03028 567 SUPERFAMILY Nucleic acid-binding proteins 234 316 IPR012340 -
Vian2g03028 567 SMART S1_6 243 316 IPR022967 -
Vian2g03028 567 Pfam Eukaryotic translation initiation factor 2 alpha subunit 354 484 IPR011488 GO:0003723|GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03028 Vian-Chr2 50938119 50948688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03028 229 567 Eukaryotic Initiation Factors Gene Family AT5G05470 81.471 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03028 K03237 - gmx:100805950 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03028 2 50938119 50948688 Vian7g01535 7 24170493 24173106 ECH
Vian2g03028 2 50938119 50948688 Vian2g03028 2 50938119 50948688 ECH
Vian2g03028 2 50938119 50948688 Vian7g01535 7 24170493 24173106 PCT