Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03017 ATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGACTATGGAAAACTACTATGATTCTGGCTGGCACATGAGCACCAGCTGGGCTCAATGCAGTGATCATTCTTCTTCCTTTGCAGTTCCTACACAAATACTTCCTCATGCCACTGACTCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCACTTCCCATTGAAGGGGCCGAAGAAGAGAGAGCAATGAGTGCTTCCAAGAGCCACAGCCAAGCTGAGAAAAGGCGCAGAGACAGAATCAATGCACAGCTTGCAACTCTCAGAAAACTTATTCCCAAATCCGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCATGTCAAAGATCTAAAGAGAAAAACCATGGATGTTAGCAGAGCTTTCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTGTGACCATGTAGAAGATGAAAGCTGCACTAAAGTGAACAAATTGAAGGAGAATATTGTGATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAACTCATCCAAGTTCTCAAGGGCTTGAGACTGACGGCAGTTAAAGCTGACATAGCCAGTGTAGGTGGCCGGATCAAAAGCATATTGGTGCTTTGTTCTAAGGATAGTGAAGAGGGTGTTTGCCTCACCACTCTCAAACAGTCCCTCAAATCTGCTGTCACCAAAATAGCTTCATCATCCATGACATCTAATTGCCCCACCAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCGTTGCCTACAGTAA 819 0.442 MGDKRLRNHGRNFRMVSIVTMENYYDSGWHMSTSWAQCSDHSSSFAVPTQILPHATDSASLQFGEFHSWPLPIEGAEEERAMSASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDHVKDLKRKTMDVSRAFTVPTEIDEVSIDCDHVEDESCTKVNKLKENIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEEGVCLTTLKQSLKSAVTKIASSSMTSNCPTRSKRQRFFLPSRCLQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03017 272 Gene3D - 77 141 IPR036638 GO:0046983
Vian2g03017 272 MobiDBLite consensus disorder prediction 77 97 - -
Vian2g03017 272 Pfam Helix-loop-helix DNA-binding domain 86 132 IPR011598 GO:0046983
Vian2g03017 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Vian2g03017 272 CDD bHLH_AtAIG1_like 78 155 - -
Vian2g03017 272 MobiDBLite consensus disorder prediction 79 97 - -
Vian2g03017 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 136 IPR036638 GO:0046983
Vian2g03017 272 SMART finulus 89 138 IPR011598 GO:0046983
Vian2g03017 272 PANTHER TRANSCRIPTION FACTOR BHLH30 74 266 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03017 Vian-Chr2 50849708 50850822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03017 21 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.667 1.01e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian2g03017 HLH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03017 - - gmx:100799687 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03017 2 50849708 50850822 Vian2g03017 2 50849708 50850822 ECH
Vian2g03017 2 50849708 50850822 Vian7g01554 7 24368976 24370369 PCT