Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03009 ATGAAAACACTACCTTCCTCCTCCGTGCCCCTCTGTCTCGTCGTCGCCGCCCTGCTTATACTCTCTCTGCCACGCTCTTCCCATGGCCTCGGTTCCGGCGCTACCCTTGCCGTCTCTGACGCCTCCACCACCGTGTGCGCCGTCGTGGCAGGCGAGTCCATTCGCCGCATTCAGTGTTACCGTCAGGGGCAGAATGTCTACATCATTCCCAACGTTAGTTTTTCAATGATTTCGGGTGGGAGGAACTACTTCTGTGGCCTAAGGTCAAGTAACTCCGATTTGATTTGTTGGAACACAAGCTCTTCCTTCGAAAGGAGAAGGCTTTACAACGATAGTTCTGTTCCATTGGAGAATCTGGCCGTTGGGGATACCCACGTTTGCGCCACCGAGGTGGGTGGTGGCACGGCCAAGTGCTGGAGAACCGGTGACACGTTTCGGCTTCCTTCTGTGACTGATACATTCTCTTCAATCTCATCTGGGTCTGGCTTCTCTTGCGGAATTTTGAGGAATAATTCACGGGTTCGGTGCTGGGGAGACACCAGCGTTTCGGATTTATCGGGACGGATTGAGAATGCATTTGGGAACATGTCCATGCTGAGTCTTGTCGCAGGTGGTTCACATGTTTGTGGATTGAACTCAACGGGGTTTGTGGCATGTGGAGGAAATAACGATTCTGGACAACTTGATTTTCCTCAAGGTGGGGCTTTTGAGTATTCTGCGGTGGCGCTTGGAGCCGAACATGGCTGTGCTATAAGAGGATTGAATGGTTCGGTTGTGTGTTGGGGTGGCAATGGGGGATTCTCGGGGACTAATGTTACCGATGGAGTTTCCTTTGAGGTAATTGTTTCTGGGTCTAATTTTGTTTGTGGATTGACAACAAACAATTTGACAGTGGTGTGTTGGGGTCCTGGTTGGTCTAATAGTTCGACGTTTGAGCTTCCTTTTCCACCTGTTCTTCCAGGGTCTTGTGTTCAATCTTCCTGTGGAGAGTGTGGTTCATATCTTGATTCTCAATCTCTATGCTCTGGCTCTGGTAACATTTGTAAACCAATGACTTGTAAGCCTCAAACAACAGCTCCACCGCCGCCATCACCGTCACCGCCTCCACCATCAATGTCACCGCCGCCACCATCACCACCACCGCCACCACCTTCGTCAACGCGATCAAAGACCTTGACAAACGGGTTATTGGCATTTGCTATTATCGGTTCTGTGGGAGCTTTTGCTGGAATATGCACTATAGTTTATTGCTTGTGGAGTGGAGTTTGTTTTGGGAAGAAGAAAGTTCACAATTCTGTGCAGCCTACAATCACAAGAGGTAGCAGTGGTTCAAACGGTGGGGGTGCTTCTAATAATAGCAATTCTTCAATATCGTCTATGATTATGCGTCAGACTTCAATGATAATGAGACGCCAGAGGAGTGGAACGTCATCAACGAAGCACCCAGACAGGGCCGAGGAGTTCACCCTGGCCGAGCTTGTGGCAGCCACCGACAATTTCTCACCAGAAAACAAGATCGGAGCTGGAAGCTTTGGTGTTGTGTACAAAGGCAAACTCGCGGATGGACGCGAGGTGGCAATCAAGAGGGGTGAAACTGGTTCCAAGATGAAGAAGTTTCAAGAGAAGGAAAGTGCATTCGAGTCTGAATTGGCTTTCTTGTCTCGCCTACACCACAAGCACTTGGTTGGACTGGTTGGGTTCTGCGAAGAGAAAGATGAGAGGCTCTTGGTGTATGAGTACATGAAGAATGGGGCGCTGTATGATCATTTGCATGACAAGAACAACGTGGAGAAGGGTAACAGTGTGTTGAATTATTGGAAAATGAGGATAAAAATTGCTTTGGATGCTGCCCGGGGAATAGAGTATCTTCATAATTATGCAGTTCCATCAATTATTCACAGAGACATAAAGTCTTCTAACATTCTTATTGATGCTACTTGGACGGCAAGAGTATCAGATTTTGGATTGTCTATGATGAGTCCAGAACCCGACCGTGATCACCGACCAATGAAGGCAGCAGGAACCGTTGGATACATCGATCCGGAGTACTACGGTTTAAATGTATTGACGGCAAAGAGTGATGTGTATGGGCTGGGAGTTGTACTGCTGGAACTTTTAACAGGAAAGAGAGCTATATTCAAGTATGGGGAAGATGGAGGCAGCCCACTAAGTGTGGTGGACTTTGCAGTGCCTCGTATATTGGCTGGAGAATTGGTGAAAATTTTGGATGCAAGGGTTGGACCACCCGATGTGAACGAGGCAGAGGCAGTGGAATTAGTGGCCTATACAGCTGTCCATTGTGTGAATTTGGAAGGGAAAGATAGACCAACCATGGCTGACATTGTGGTCAATTTAGAGAGAGCTTTGGATATTTGTGAGAGTAGCCACGATACCATTTCCAGTGGCTCTATCTCTGTTGTTTCAGAATGA 2430 0.4802 MKTLPSSSVPLCLVVAALLILSLPRSSHGLGSGATLAVSDASTTVCAVVAGESIRRIQCYRQGQNVYIIPNVSFSMISGGRNYFCGLRSSNSDLICWNTSSSFERRRLYNDSSVPLENLAVGDTHVCATEVGGGTAKCWRTGDTFRLPSVTDTFSSISSGSGFSCGILRNNSRVRCWGDTSVSDLSGRIENAFGNMSMLSLVAGGSHVCGLNSTGFVACGGNNDSGQLDFPQGGAFEYSAVALGAEHGCAIRGLNGSVVCWGGNGGFSGTNVTDGVSFEVIVSGSNFVCGLTTNNLTVVCWGPGWSNSSTFELPFPPVLPGSCVQSSCGECGSYLDSQSLCSGSGNICKPMTCKPQTTAPPPPSPSPPPPSMSPPPPSPPPPPPSSTRSKTLTNGLLAFAIIGSVGAFAGICTIVYCLWSGVCFGKKKVHNSVQPTITRGSSGSNGGGASNNSNSSISSMIMRQTSMIMRRQRSGTSSTKHPDRAEEFTLAELVAATDNFSPENKIGAGSFGVVYKGKLADGREVAIKRGETGSKMKKFQEKESAFESELAFLSRLHHKHLVGLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVEKGNSVLNYWKMRIKIALDAARGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSMMSPEPDRDHRPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKYGEDGGSPLSVVDFAVPRILAGELVKILDARVGPPDVNEAEAVELVAYTAVHCVNLEGKDRPTMADIVVNLERALDICESSHDTISSGSISVVSE 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03009 809 Gene3D Phosphorylase Kinase; domain 1 459 580 - -
Vian2g03009 809 ProSiteProfiles Protein kinase domain profile. 500 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g03009 809 SUPERFAMILY Protein kinase-like (PK-like) 477 785 IPR011009 -
Vian2g03009 809 SUPERFAMILY RCC1/BLIP-II 46 265 IPR009091 -
Vian2g03009 809 Pfam Protein kinase domain 502 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g03009 809 MobiDBLite consensus disorder prediction 436 456 - -
Vian2g03009 809 FunFam Serine/threonine-protein kinase-like protein CCR4 581 803 - -
Vian2g03009 809 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Vian2g03009 809 Gene3D Transferase(Phosphotransferase) domain 1 581 802 - -
Vian2g03009 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Vian2g03009 809 MobiDBLite consensus disorder prediction 355 389 - -
Vian2g03009 809 FunFam serine/threonine-protein kinase-like protein CCR1 469 580 - -
Vian2g03009 809 MobiDBLite consensus disorder prediction 355 387 - -
Vian2g03009 809 SMART serkin_6 500 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g03009 809 Gene3D - 26 188 IPR009091 -
Vian2g03009 809 Gene3D - 189 347 IPR009091 -
Vian2g03009 809 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 195 795 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03009 Vian-Chr2 50760233 50762662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03009 1 809 Receptor kinase-like Gene Family AT3G55950 59.157 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vian2g03009 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03009 - - vra:106757659 1473.76