Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02990 ATGGCCTCCATCGCCGCCACCACATCATACTTCTTCGGCACCCGTCTCTACAGCCCAACAACCTTAAACACCGGAAGGTTCCACGCGCTCTTCAACTTCGGCACCAAGAAGGCGCCGCCGCCCCCGCCGAAGAAAAAGGAAGTCAAAGTGAAACCCTCCTCCGGCGACCGCCTGGTGTGGTTCCCGAATGCAGAGCCACCGGAGTGGCTCGACGGAAGCATGATCGGCGACCGAGGGTTCGATCCGTTCGGGTTCTCAAAGCCCGCGGAGTACCTGCAGTTTGACCTGGACTCGCTGGATCAGAACCTCGCGAAGAACGTCGCCGGCGAAATCATCGGAACAAGGGTGGAGGTTGCAGAGGTCAAACCGACGCCGTTTCAGCCCTACACGGAGGTTTTCGGGATTGAGAGGTTCCGCGAGTGCGAAGTCATTCACGGAAGGTGGGCAATGCTGGGTGCTCTCGGTGCTTTGGCCGTTGAGGCTCTCACTGGAGTCGCATGGCAAGACGCCGGAAAGGTAGAGCTGGTGGAAGGATCATCTTACCTGGGACTTCCACTTCCGTTTTCATTGACAACACTGATATGGATCGAGGTGATAGTGATAGGATACATAGAGTTTCAAAGAAACGCAGAACTTGACCCAGAGAAAAGGTTGTACCCAGGAGGCAAGTTCTTCGATCCTTTGGGTTTGGCCAACGACCCTGAAGAAAAAGCCAGACTTCAACTTGCAGAGATCAAGCATTCCCGCTTGGCCATGCTCGTCTTCCTCATCTTTGCCATTCAAGCTGCTGTCACTGGAAAAGGTCCTATCAGTTTTATTGCTACCTTCAACAAGTGA 837 0.5436 MASIAATTSYFFGTRLYSPTTLNTGRFHALFNFGTKKAPPPPPKKKEVKVKPSSGDRLVWFPNAEPPEWLDGSMIGDRGFDPFGFSKPAEYLQFDLDSLDQNLAKNVAGEIIGTRVEVAEVKPTPFQPYTEVFGIERFRECEVIHGRWAMLGALGALAVEALTGVAWQDAGKVELVEGSSYLGLPLPFSLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKARLQLAEIKHSRLAMLVFLIFAIQAAVTGKGPISFIATFNK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02990 278 Gene3D Chlorophyll a/b binding protein domain 59 278 - -
Vian2g02990 278 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 38 274 IPR001344 GO:0009765|GO:0016020
Vian2g02990 278 Pfam Chlorophyll A-B binding protein 66 262 IPR022796 -
Vian2g02990 278 SUPERFAMILY Chlorophyll a-b binding protein 55 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02990 Vian-Chr2 50539714 50541184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02990 12 275 Chloroplast and Mitochondria Gene Families AT3G08940 71.212 8.19e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02990 K08915 - gmx:100820335 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02990 2 50539714 50541184 Vian2g02990 2 50539714 50541184 ECH
Vian2g02990 2 50539714 50541184 Vian7g01577 7 24715214 24717519 ECH
Vian2g02990 2 50539714 50541184 Vian7g01577 7 24715214 24717519 PCT