Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02980 ATGGCGTCGAGCGATCGCACAGTGTTACAATTCTCTTCATCTTCTCAAAGTTTCTCCGCGAAGGTTCACCCTCTCGTTATCTTTAATATCTGCGATTGCTACGTTCGGCGTCCTGACCAAGCCGACCGTGTCATCGGAACCCTACTCGGATCCGTCCTTCCGGACGGAACAGTAGATATTCGCAATTCCTATGCTGTTCCTCACAATGAGTCTATTGAGCAGGTTGCTCTGGATATAGAGTATCACCATAATATGTTAATATCCCACCAAAAAGTGAATCCAAAAGAAATCATAGTTGGATGGTATTCTACTGGTCTTGGAGTAACCGGTGGTAGTGCATTAATCCACGAGTTTTATTCTCGAGAAGTACAACATCCCATACATTTGACTGTTGATACTGGATTTACAAATGGAGGTGGTACCATCAAAGCATACGTGTCTAACAATTTATCCCTTGGAGAACGGCAAATTGCTGCACAGTTTCAAGAAATCCCATTAGATCTTCGTATGATTGAAGCTGAGCGAATTGGATTTGATATGCTCAAGGCAACTGCAGTTGACAAAATTCCTTCAGATTTAGAAGGGATGGAAGCATCGATGCAACATCTACTAGTCTTGATTGATGATATCTACAAATATGTTGACGATGTTGTGGAAGGGCGAGTTGCACCAGACAACAAAATCGGGAGATTTATATCAGATGCTGTAGGTTCCCTTCCCAAAGTGTCTCCTCGAGTTTTTGATAAGCTTGTGAATGACAGCTTGCAGGATCACTTGCTTTTGCTATATTTATCTAGCATCACAAGAACGCAGCTTAGCTTGGCCGAGAAGTTGAACACAGCTGCCCAGATTCTGTGA 858 0.4289 MASSDRTVLQFSSSSQSFSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVQHPIHLTVDTGFTNGGGTIKAYVSNNLSLGERQIAAQFQEIPLDLRMIEAERIGFDMLKATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVDDVVEGRVAPDNKIGRFISDAVGSLPKVSPRVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02980 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vian2g02980 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 20 122 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian2g02980 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian2g02980 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 12 282 - -
Vian2g02980 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vian2g02980 285 FunFam Eukaryotic translation initiation factor 3 subunit F 8 186 - -
Vian2g02980 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Vian2g02980 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Vian2g02980 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02980 Vian-Chr2 50452543 50456355 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02980 2 285 Eukaryotic Initiation Factors Gene Family AT2G39990 74.570 5.05e-156 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02980 K03249 - gmx:100811797 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02980 2 50452543 50456355 Vian2g02980 2 50452543 50456355 ECH