Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02969 ATGGAAGGCAATAAAGAAAGTAAAATGATATCGGCTGCGGCCTTTGTAGAAGGGGGGATTCAAGACTCCTGTGATGATGCTTGCAGTATATGTCTTGAGGAGTTTTCTGCAAGTGATCCTTCAACGTTCACTAATTGCAAGCATGAGTTTCACCTACACTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAGTCTATTAGCTTGAAGGATCTTACTAGTCAGGAATTGTTTGAGGCAGTAGAGCAGGAGAGGAAGTTGAGGGTTGCCACATCAAGAAATGCTACTATTTTTCATCACCCTGCATTTAATGATTTTGAATTGCAGCACTTACGCATGAATGTAAATGATATTGAGCTTGAAGAGCAAATTATTCAACATTTAGCTGTTGCTGCAGCAATGAGGAGAGCAGACCAACTTGGCCGTAGAGCAGGACGACAAGCTAATTCATCACCTCGTGGTCATCCACACTCATTAGTGTTATCTAATATGGCACCTGCTGAAGAGGAAAATGACCAAACGATAATTCCTAATACAAGTGCATCTACTCCAATAAAATCTGAGAGAATTGGAGCATTGCAACAGATGCTGCGAGTTCGAACTCAAAGCTCTTCTTCAGCTTCTGGATCTAGAATTTACTCCAATGATAGAGGCTCTACTACTCCCTCGTCATCAGTAAACGGCGATAAAGCAGAGTTCCAGTCACATTCTGATTCGCTGCGGTCCAGATTCAATGCAGTGTCTGCGAGATACAAAGAATCAATCTCAAAGGGTGCAAGGGGATGGAAGGAAAGGTTGTTCTGTCGTAGTTGTTCCATGTCAGAACTTGGTTCAGAAACATGGAGGAGAGAGATGAATTCTGATATTTCTAGTGTATCCCGACTAAAGGAATCCCTTGAATCTAGTGAGAATAGAAAAGCTGCGGGTACTTCTTTGTCTATTCATATGGAGGATTGTTCCATTGGAGAAGTGAGCAATCACAATGATGTTGAAGTTAGCGGGGAGACCTCTTCACATGATGACAATACTCCACCTGCTTGTTCTGCTGCCTCACATTTAAATTGA 1080 0.4259 MEGNKESKMISAAAFVEGGIQDSCDDACSICLEEFSASDPSTFTNCKHEFHLHCILEWCQRSSQCPMCWQSISLKDLTSQELFEAVEQERKLRVATSRNATIFHHPAFNDFELQHLRMNVNDIELEEQIIQHLAVAAAMRRADQLGRRAGRQANSSPRGHPHSLVLSNMAPAEEENDQTIIPNTSASTPIKSERIGALQQMLRVRTQSSSSASGSRIYSNDRGSTTPSSSVNGDKAEFQSHSDSLRSRFNAVSARYKESISKGARGWKERLFCRSCSMSELGSETWRREMNSDISSVSRLKESLESSENRKAAGTSLSIHMEDCSIGEVSNHNDVEVSGETSSHDDNTPPACSAASHLN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02969 359 Pfam Ring finger domain 27 68 IPR001841 -
Vian2g02969 359 MobiDBLite consensus disorder prediction 201 244 - -
Vian2g02969 359 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 14 76 - -
Vian2g02969 359 SMART ring_2 28 68 IPR001841 -
Vian2g02969 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 78 IPR013083 -
Vian2g02969 359 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Vian2g02969 359 SUPERFAMILY RING/U-box 22 75 - -
Vian2g02969 359 MobiDBLite consensus disorder prediction 335 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02969 Vian-Chr2 50348617 50351373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02969 25 76 C3H Transcription Factor Family AT4G00335 44.231 2.19e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02969 K19043 - gmx:100800419 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02969 2 50348617 50351373 Vian2g02969 2 50348617 50351373 ECH
Vian2g02969 2 50348617 50351373 Vian3g02592 3 40331060 40334925 PCT