Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02948 ATGGCTTCGAGATTCTGGACTCAGGGTGGGAGTGATTCCGAGGAGGAGGAGAGTGATTACGACGAGGAGGTTGAAACCGCGACAGGTGAATCTGCTAGTCAAGCAGTTACAAGCAGGTACCTGCAGGAAAATGCTAGTGACAGTGATGATTCCGATGGGCAGAAGCGTGTTGTGCGGTCGGCGAAAGATAAGCGTTTCGAGGAGATGGCCTCCACTGTTGATCAGATGAAAAATGCCATGAAGATTAATGATTGGGTGAGCCTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAGAAGGTTATGCGTGTCACTGAGTCTGTGAAAGTTCCGAATCTCTACATCAAGACGCTTGTGATGTTGGAAGATTTCTTGGCTCAGGCCTTGGCTAATAAGGATGCCAAGAAGAAGATGAGCAGTAGCAATGCTAAAGCATTGAACACCATGAAGCAGAAACTGAAGAAAAATAATAAACAGTACGAGGATTTGATTAATAAGTGTAGGGAGAATCCTGAGAGTGACGAGGAGAAGGAAGAAGAGGAGAGCGAGGAAGAGTATGAGAGTGATGATGAGATTATTGAGCCAGAGCAGCTTCGGAAACCAGAAGCAAAATCTGATTCTGAAGCCTCTCAGTATGATGATGAAAAGCATGATGCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGATCGGCTATTGGATAGACAATTTATGAAAGACCCCAGTGAGATCACATGGGACTCGGTTAACAAGAAGTTCAAAGAGGTTGTGGCTGCTAGGGGCAGAAAGGGGACTGGGAGATTTGAACAGGTTGAGCAGCTTACTTTCTTAACGAAAGTTGCTAAGACACCTGCACAAAAGTTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAATTTGATGTCAATCCTGGGCTCAATGGACATATGCCCATAAATGTGTGGAAAAAATGTGTGCAAAACATGCTGGTCATTCTTGATATTCTAGTGCAGCATACAAACATATTGGTTGACGATTCTGTGGAACCAGACGAGAACGAAACTCAGAAAGGGGCTGACTATAATGGATCAATTCGGGTATGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGACGTTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGGGACTATGTTGAGAGACTCAGGGATGAGCCCTTGTTTCTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGAGTTGGGAATTTCAAAGCTGCCTCTAAGGTGGCCTTGAGGAGAGTTGAGCTCATTTACTACAAACCGCAAGAAGTTTATGATGCAATGAAAAAATTGACTGAGCTGACAGAGAATGGAGATGATGCAGGGGAGACAAGTGAGGAGCCAAAAGGATTTGAGGAATCAAGAATTCCTACTGCATTTATTGTTACCCCAGAGATTGTGGCCCGGAAGCCCACATTCCCTGATAATAGCAGGACCATAATGGATGTATTGGTATCATTGATATACAAGTACGGAGACGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATACCACCATGCTCTCCTTGATGAGTTCTCAATTGCCCGTGATCTACTTCTTATGAGTCATTTGCAAGATAGTATTCAACACATGGACATTTCAACGCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGTGCTTTTCGGATTGGACTGATTTCTGAAGCTCATGGTTGTCTCTCTGAACTGTACTCTGGTGGAAGGGTAAAAGAGTTACTTGCCCAAGGTGTGTCACAAAGTCGCTATCATGAGAAGACTCCCGAACAGGAAAGGTTGGAAAGAAGGAGGCAAATGCCATATCATATGCACATCAATCTTGAACTCCTGGAGTCAGTACATCTGGTATCTGCCATGCTGCTGGAAGTTCCTAATATGGCAGCCAATGTTCATGATGCTAAACGCAAGGTAATTTCTAAGACTTTCCGTCGCTTGCTTGAGGCCAGCGAGAAGCAAACATTCACTGGTCCACCGGAAAATGTGAGAGATCATGTTATGGCTGCCACAAGGTTTCTCGTAAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTCGATGTATGGAAATTTGTGAGAAATCGAGACACTGTGCTTGAAATGCTGAAAGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCGCTTCTTCTTATGAATCCCTGAGCCTGGATCAACTTTCAAAATTTTTTGATCTCTCTGTTTCTTGCACCCATAGTATTGTCAGTAGAATGATGATCAATGAAGAGCTCCATGCAAGCTGGGACCAGCCAACTGGGTGTGTTGTTTTCCAAGATGTTGAATACTCTAGGCTGCAGGCATTGGCATTCCAGTTGACAGAGAAATTATCTATCCTTGCAGAGAGCAATGAAAGAGCAACGGAAGCAAGGATAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCCGCGGCTGCTTCCGGTGGTAGTGGAACAGCCTCTTCAGGTGGTAGATGGCAAGACCTGGCCCTTTCACAGCCAAGGCAAGGCAGTGGGCGTGCTGGATATGGTAGTGGTGGTGGGAGGTCAATAGGTCAAGTAGCCGCAGGTGGCTATTCCAGGGATCGAATGGGACGGGGCACAGGTGGTGGCTACCAGAGTGGACGGTATCATGATGGAGGTTATGGGAGGAGTGCTCAAGGGGGTTCTGCATTGAGGGGACCCCAGGGCGATACGTCTTCACGCATGGTTAGCCTTAAGGGTGTTCGAGCTTAA 2823 0.4552 MASRFWTQGGSDSEEEESDYDEEVETATGESASQAVTSRYLQENASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESVKVPNLYIKTLVMLEDFLAQALANKDAKKKMSSSNAKALNTMKQKLKKNNKQYEDLINKCRENPESDEEKEEEESEEEYESDDEIIEPEQLRKPEAKSDSEASQYDDEKHDAGDGPWDQKLSKKDRLLDRQFMKDPSEITWDSVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQHTNILVDDSVEPDENETQKGADYNGSIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPLFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMKKLTELTENGDDAGETSEEPKGFEESRIPTAFIVTPEIVARKPTFPDNSRTIMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSIQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLEASEKQTFTGPPENVRDHVMAATRFLVKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFASSYESLSLDQLSKFFDLSVSCTHSIVSRMMINEELHASWDQPTGCVVFQDVEYSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAASGGSGTASSGGRWQDLALSQPRQGSGRAGYGSGGGRSIGQVAAGGYSRDRMGRGTGGGYQSGRYHDGGYGRSAQGGSALRGPQGDTSSRMVSLKGVRA 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02948 940 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vian2g02948 940 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Vian2g02948 940 Pfam PCI domain 660 788 IPR000717 -
Vian2g02948 940 Coils Coil 144 171 - -
Vian2g02948 940 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Vian2g02948 940 MobiDBLite consensus disorder prediction 45 63 - -
Vian2g02948 940 MobiDBLite consensus disorder prediction 883 940 - -
Vian2g02948 940 MobiDBLite consensus disorder prediction 27 44 - -
Vian2g02948 940 MobiDBLite consensus disorder prediction 1 63 - -
Vian2g02948 940 MobiDBLite consensus disorder prediction 194 229 - -
Vian2g02948 940 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 935 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vian2g02948 940 MobiDBLite consensus disorder prediction 175 193 - -
Vian2g02948 940 MobiDBLite consensus disorder prediction 135 154 - -
Vian2g02948 940 MobiDBLite consensus disorder prediction 155 174 - -
Vian2g02948 940 MobiDBLite consensus disorder prediction 12 26 - -
Vian2g02948 940 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 871 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vian2g02948 940 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 IPR000717 -
Vian2g02948 940 MobiDBLite consensus disorder prediction 133 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02948 Vian-Chr2 50161568 50165136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02948 1 940 Eukaryotic Initiation Factors Gene Family AT3G56150 68.538 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02948 K03252 - gmx:100781967 1568.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02948 2 50161568 50165136 Vian2g02612 2 46828286 46834504 ECH
Vian2g02948 2 50161568 50165136 Vian2g02948 2 50161568 50165136 ECH