Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02947 ATGGACATGCCTACCATTGATGTGGACCTTGGGCCGGAGAAGTTTGAAGAGGAAAAGCAAGGAGGTCCTTTGTTTCATTGTGATCTTTGTGATACAGAAGTAGTTCACAAGTTGGCACAAATGTTCCTTCCAGGTCTAGCTAGTGCTTGTGTTGATAACACATCAGGAGATCTCTTTAAGACGGCCGGTTCAATAGCTGTTGATATGAGGAAGGAGATGATAGAGTATCTTACCCAAAGAAGTGAATCATTTGTTGCTGAGTCTGTTATATTGGAAGGTGGTCCAGACGATGAAGTATCAGACCATCCTTATGATATTATTTCTAATCTAGTTGATGACTTTGCAAGTTCAAAGAGAAATTTGTTTAGTCGAGTTTCTGGATGGCTACTAAGTGAAAAGAGGGAAGATAATATAGAAGATTTTGTTCAAGAGATGGAAGTAAATGGGTTTTGGACACTTGAGAGGAGGGAAAAAATTGCAGAAACTTTGTTAAAAAATGTTGACTTTGAGAACTCATATCATTGCAACATGAGTTTTAATGACATAGAAGATCTTGTCAATCATAAAGATAATTGCAACTTTAGATCTATAATATGTGAAAATGAGGGTTGCAATTCTAGATTTTGCGCATCTCATCTAAATGACCATGATTCAACTTGTCCTTTCAAGATAATTCCCTGTGAACAAAAGTGTCCTGCTAACATTATGAGACGTGAGATGGACAGACATTGTATAACTGTTTGTCCAATGAAGCTTGTAAATTGTCCTTTTTATGCTATTGGTTGTCGATCAGCTGTAGCACAATGTATGATTGAAAAACATCGTTCAGATGATATTAATTCTCACTTATGGCATTTTCTTAAAGGAATTTACAAAGAAGCATCAGGAGATGATCTCACTCGGCGAGTGAAACAAATTATACAGGCATCACCAAACAACCGTTTAACAGAGGCTAGAGATGTTAGATCTTTAAGCTTCATTGTCAAGGATATTGAAGCTAAGTTGGAACCTTTCAAAGTAACTATTGTGGATAAAAGTAATGTAAAGACTGACGCCAAGAACGGTGAAGAGGAAGGTGGTGAAAATAATATGAAAAATAGTGAAAGAAGCATTACTTCAAATATGGCGAATTCATCAGATAAAGTTGAAGTGAGTGATACACCGAATGTATCACAAAATGAAGATAATAAACCTAGTTATGTTGAAAATGAAGGTCATGAAGAAAGGACACAAACTTCAAATATGACAAATGTATCTGATACTACTAAAACTGAAACTGACATCTTGAATGACAATAACCAAGATGTTGCAACTGCTGAATTAACAACTAAGACAAATGACGAAGAAAGCACTCAAACACTCAACAAAAATATGTCCAATGAGGAAGTTGGTGTAAAAAATGAGGATGAAGCAAAGAATGATACTAAAAGCAAATTTATTGAAGACAATGAGCAAATATTAAATAAAGACAATAACTTCAAAGATAAGGACGACGAGCAAAACATACATAATTCAAAAATGGAAGTCAAGGATGGTGCACAGAATAATGTCAAGGACAAAGATATTGAAGATGACAACTAA 1581 0.3517 MDMPTIDVDLGPEKFEEEKQGGPLFHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFKTAGSIAVDMRKEMIEYLTQRSESFVAESVILEGGPDDEVSDHPYDIISNLVDDFASSKRNLFSRVSGWLLSEKREDNIEDFVQEMEVNGFWTLERREKIAETLLKNVDFENSYHCNMSFNDIEDLVNHKDNCNFRSIICENEGCNSRFCASHLNDHDSTCPFKIIPCEQKCPANIMRREMDRHCITVCPMKLVNCPFYAIGCRSAVAQCMIEKHRSDDINSHLWHFLKGIYKEASGDDLTRRVKQIIQASPNNRLTEARDVRSLSFIVKDIEAKLEPFKVTIVDKSNVKTDAKNGEEEGGENNMKNSERSITSNMANSSDKVEVSDTPNVSQNEDNKPSYVENEGHEERTQTSNMTNVSDTTKTETDILNDNNQDVATAELTTKTNDEESTQTLNKNMSNEEVGVKNEDEAKNDTKSKFIEDNEQILNKDNNFKDKDDEQNIHNSKMEVKDGAQNNVKDKDIEDDN 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02947 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 280 IPR013083 -
Vian2g02947 526 MobiDBLite consensus disorder prediction 374 398 - -
Vian2g02947 526 ProSiteProfiles Zinc finger TRAF-type profile. 211 263 IPR001293 GO:0008270
Vian2g02947 526 MobiDBLite consensus disorder prediction 374 419 - -
Vian2g02947 526 MobiDBLite consensus disorder prediction 443 526 - -
Vian2g02947 526 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 24 491 - -
Vian2g02947 526 MobiDBLite consensus disorder prediction 462 526 - -
Vian2g02947 526 MobiDBLite consensus disorder prediction 443 461 - -
Vian2g02947 526 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02947 Vian-Chr2 50156019 50159288 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02947 - - gmx:100799182 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02947 2 50156019 50159288 Vian2g02947 2 50156019 50159288 ECH
Vian2g02947 2 50156019 50159288 Vian3g02561 3 39880426 39882571 PCT