Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02933 ATGGCGGAAGGGAAGGAAGAGAGTAAATCTAGCGAAGAGAGCGTGAAGCTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAACCCGAACTCCTTGCAATGTTCCAGGAGTTCGCGCTCGTCGACGAGGTCAACATAATCAAGGACAAAGCAACTCGTGTTTCCCGAGGTTGTTGTTTCGTCATTTGTCCTTCCAGGGAGGAGGCTGATAAGGCCGTCAATGCGTGTCACAACAAGAAGACGCTACCCGGGGCATCCAGTCCATTACAAGTGAAGTATGCAGACGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCGAAGAATGTATCCGAAGTCGAAATATCTGCACTTTTCTCCCAGTATGGAACCATAAAGGATTTACAGGTTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGACCAGGCGCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTTAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCACACAGTGATTCCCAGCACCCATCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGAGGTTATGGGCTCATGCCCTACCGCATGCCACCAATGCAGAGTCAACACGGTTTTCATAACATGATGCCCCATATGAATCATCAAGGAAATGCATTACGGCCTGATCTTGGCCCTAATATGAACCCTAGAAATTATCATGTGGCTCCTGCAAGTTATGTTGGTTCTTATCCTGCTGTAACAGGTCTACAACATCCCATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATGCTTCTCCCGGCTCTGTTTCACCTGCTAGTGGAAACAACAACACTGCTGCATCTTCTGGTGGCAGCAAAAATTCTGGGGGGCAGGTTGAAGGACCACCTGGTGCCAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAACTTGCCAATGCTTTTCAGCCATTCGGTATGGTCTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCTCCAGAGGATGCTCAATCTGCCATTGGTATGATGAATGGATTCCAATTAGGAGGTAAGAAATTAAAGGTCCAGCTTAAGAGAGATAACAAACAGGGTAAACCTTACTGA 1299 0.4519 MAEGKEESKSSEESVKLFVGQVPKHMTEPELLAMFQEFALVDEVNIIKDKATRVSRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSQYGTIKDLQVLRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHSDSQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMPYRMPPMQSQHGFHNMMPHMNHQGNALRPDLGPNMNPRNYHVAPASYVGSYPAVTGLQHPMAYPTGMISPRPMNASPGSVSPASGNNNTAASSGGSKNSGGQVEGPPGANLFIYHIPQEFGDQELANAFQPFGMVLSAKVFVDKATGVSKCFGFVSYDSPEDAQSAIGMMNGFQLGGKKLKVQLKRDNKQGKPY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02933 432 MobiDBLite consensus disorder prediction 310 338 - -
Vian2g02933 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Vian2g02933 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Vian2g02933 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Vian2g02933 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Vian2g02933 432 MobiDBLite consensus disorder prediction 185 208 - -
Vian2g02933 432 Gene3D - 101 192 IPR012677 -
Vian2g02933 432 CDD RRM1_2_CELF1-6_like 16 92 - -
Vian2g02933 432 FunFam RNA-binding protein BRN1 2 99 - -
Vian2g02933 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 419 IPR000504 GO:0003723
Vian2g02933 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Vian2g02933 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Vian2g02933 432 Gene3D - 313 424 IPR012677 -
Vian2g02933 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Vian2g02933 432 CDD RRM3_CELF1-6 349 421 - -
Vian2g02933 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Vian2g02933 432 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Vian2g02933 432 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Vian2g02933 432 SUPERFAMILY RNA-binding domain, RBD 103 427 IPR035979 GO:0003676
Vian2g02933 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 425 IPR000504 GO:0003723
Vian2g02933 432 SMART rrm1_1 348 421 IPR000504 GO:0003723
Vian2g02933 432 SMART rrm1_1 16 92 IPR000504 GO:0003723
Vian2g02933 432 SMART rrm1_1 104 179 IPR000504 GO:0003723
Vian2g02933 432 MobiDBLite consensus disorder prediction 306 342 - -
Vian2g02933 432 FunFam RNA-binding protein BRN1 314 424 - -
Vian2g02933 432 PANTHER RNA BINDING PROTEIN 14 426 - -
Vian2g02933 432 Gene3D - 2 100 IPR012677 -
Vian2g02933 432 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02933 Vian-Chr2 50017391 50021712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02933 344 428 Eukaryotic Initiation Factors Gene Family AT1G71770 38.636 1.52e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02933 K13207 - gmx:100813239 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02933 2 50017391 50021712 Vian2g02933 2 50017391 50021712 ECH
Vian2g02933 2 50017391 50021712 Vian3g01938 3 23060768 23064896 PCT