Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02929 ATGTTCCTAGCAGAACTACAACCTACTCCTTTGGACATGACTCATCAAACGCCTTCACAGGAAATTGTTGCGAAGGACTTGCACGGGTTCGAGTGGCATTTTCGACACATATACCGTGGTCAGCCGAAACGACACTTGCTAACTAGCGGTTGGAGCACGTTCGTGAATGCAAAGAAACTTGTTGCTGGAGATTCATGCATTTTTGTTAGTGGGGAGTATGGAGAAGTTCGTGTTGGGATTCGTCGGGCAATTAGACATCACAGCAATGCATCCCCCTCTTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGGCTAGTGCTTCCCATGCTGTCGCCACAGGATCCATGTTCACTGTCTATTACCACCCTTGGACGAACCCCTTTGAGTTTATCATTCCTCTGAAAAACTATTTGAAGTCAACTGTACCCGACTATTCAATTGGAACGAGAGTTCAGATGCAGTGTGATGTTGAAGAGTCTTTAAGAAGATATGCAGGTACGATAATTGGTAATGAAGTTATTGACAGCATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATGCCATAGTAGATGCCTTCATGCACCCTGAAAGGGTCTGTCCTTGGTGGATTGAGCCCTTGGAATCTGGCATGGAGAAGCACATTCCCGTTCTCCCCAACCCAAAAAAGGCACATGTACTTCACCAGCGCCCTTTGCCTGGATTAAATGTCTTTGCCATGGATGATGCTGCTGCTCAGAGTTCAGCCAGGCCGGTAGCGGATAGGGACTTGCAAGGACAAGATTACAGTGGCCTGAGTACTTCACGGGCATTGCAAAGACCACCATCGACTGATGTAATCCACCCATCGAAGTTCTCAATCCGTGGCTCACAATTCGGGAAGGAGAATCTCAACCAGCTTCCCTTTCTGATGCAAGACATTCTTCATAAATCTCTTGGAAGATCAACGTCATTGCCACATGAAGACTTGTCAATTTCAAGTTCAAATTTAAGCTCCCTTTGTTCTGAATCCTTGGGATGGCCGCCTTCTGAATCTAGAAATGAAAATGATGCTCCACTTGGCCATCTTGGCAGTTGTAGCAAATACAAGCTTTTTGGAGTTAACTTAATTGACCGGCAACCGGAGCTCCCTTCACCACAACTTGCTGGTTTCAGCAAGACTTCAAGTCTGCTTTCTAGTCCTCCAATGTGTGTTACCTCCGGGAAAACATGTAAGAAGTGTCGTTCTGTCAATAATCGTAGCTGCACAAAGGTTCTTAAGCTGGGAACTGCTCTCGGAAGAGCAGTTGATCTAACCCGATTTCGTGGATATGATGAACTCATTGCTGAGCTCGACTCGATGTTTAATTTTGGAGGCAGCTTAGTCAATGGAAGCAGTGGTTGGCATGTGACCTGCATAGATGATGATGGAGACATGATGTTCTTGCGAGATTACCCATGGCAGTTAAGTACCAAAACTAACAACATCATATGA 1497 0.4569 MFLAELQPTPLDMTHQTPSQEIVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNAKKLVAGDSCIFVSGEYGEVRVGIRRAIRHHSNASPSSSLISGHSMQLGILASASHAVATGSMFTVYYHPWTNPFEFIIPLKNYLKSTVPDYSIGTRVQMQCDVEESLRRYAGTIIGNEVIDSIRWPGSEWRCLKVQWDAIVDAFMHPERVCPWWIEPLESGMEKHIPVLPNPKKAHVLHQRPLPGLNVFAMDDAAAQSSARPVADRDLQGQDYSGLSTSRALQRPPSTDVIHPSKFSIRGSQFGKENLNQLPFLMQDILHKSLGRSTSLPHEDLSISSSNLSSLCSESLGWPPSESRNENDAPLGHLGSCSKYKLFGVNLIDRQPELPSPQLAGFSKTSSLLSSPPMCVTSGKTCKKCRSVNNRSCTKVLKLGTALGRAVDLTRFRGYDELIAELDSMFNFGGSLVNGSSGWHVTCIDDDGDMMFLRDYPWQLSTKTNNII 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02929 498 CDD B3_DNA 19 82 IPR003340 GO:0003677
Vian2g02929 498 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 492 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian2g02929 498 MobiDBLite consensus disorder prediction 257 290 - -
Vian2g02929 498 SUPERFAMILY DNA-binding pseudobarrel domain 8 112 IPR015300 -
Vian2g02929 498 Pfam Auxin response factor 110 191 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian2g02929 498 Gene3D - 147 220 - -
Vian2g02929 498 SMART B3_2 2 84 IPR003340 GO:0003677
Vian2g02929 498 FunFam Auxin response factor 147 218 - -
Vian2g02929 498 SUPERFAMILY CAD & PB1 domains 424 492 - -
Vian2g02929 498 Gene3D - 3 84 IPR015300 -
Vian2g02929 498 Pfam B3 DNA binding domain 18 83 IPR003340 GO:0003677
Vian2g02929 498 ProSiteProfiles PB1 domain profile. 421 498 IPR000270 GO:0005515
Vian2g02929 498 MobiDBLite consensus disorder prediction 268 282 - -
Vian2g02929 498 ProSiteProfiles B3 DNA-binding domain profile. 1 84 IPR003340 GO:0003677
Vian2g02929 498 Gene3D - 417 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02929 Vian-Chr2 49995052 49998243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02929 10 488 B3 DNA Binding Superfamily AT4G23980 36.128 1.21e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian2g02929 Auxin_resp 3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02929 - - gmx:100802387 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02929 2 49995052 49998243 Vian2g02929 2 49995052 49998243 ECH