Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02920 ATGACCGCTGAAGCGCCGAAGCCAGCGCGACCCTGTGACTACTGTGGTCACTCCATGGCGGTTCTCTACTGCAGAGCCGATTCAGCCAAGCTCTGCTTCTCGTGCGACCGCGAGGTTCACTCTACCAACCAGCTCTTCTCGAAGCACACGCGGACGCTGCTCTGCGACGCATGCGATGATTCCCCTGCTACCATACTCTGTTCCACCGACACCTCTGTTTTCTGCCAGAACTGCGACTGGGAGAAGCACAACCCGTCGCTCTCCGATTCCCTTCACCAACGGAGGCCCCTCGAAGGCTTCACCGGTTGCCCTTCGGTCTCCGAACTTTTATCCGTTGTGGGGTTTGGAGATCTCAGCAAAAAATCGCTGCTTTCTTCGCCTCAGGGAAGTGCCGCCGATGGGTTCCTCGGGTGTGAAATTGAAGGGTTTTCGGATTTGTTTGTTTGGGATGCGCCTTCTGTTGTTACGCTTGATGATTTGATTTCTTCTTCCGCTTCTTCTCATAGCTTTCAGGCCATGGAAGTTCCTCCCCTGCCTAAGAATCGTAAGGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAGGTCTGAGCCATTGGATCTTGAACAATATGTGCAACCAGAAAACCTGTCCTCGGCTTTTGAAAGTGACGTGGAGGTTGATATCTATCCTTATCATGAGATAAAGCTTTTACTTCACTTCAACATATATCTTGCTTTCTTATTTCCTGTGCCTGGCCTTGGTCTCTTCTCTTATGGGCAAGCTAGGTTGTTAGGTTGCTCTTTTAAACCATTCAACGATGCCTTCTTAATTGTGCATGGTTGGCATAGAGAAATGAGTGAGCCTATGTATCAAGTTGTTCCTCCTGACCCATCATTGAGAACTTATACTGAAGAAGTTCCAGTTAAACAATCCACTTCTGTGGGGGAAACTCACACCTTTGGCGACAAGGGAGGGAATCCATCTATTTCTCTTAACTCTGAAACCCTACCAACTACTCCCAAAGCTGGTGCATGTGAGTTAACTAGCCAAGAAAGAGATTCTGCATTGTTACGGTATAAACAGAAGAAGAAAACAAGAAGATATGACAAGCACATAAGATATGAATCACGAAAAGTTCGTGCAGAAAGCAGGGTGAGAGTCAAGGGTCGATTTGCTAAGATGGAGCGGGAACATTAA 1200 0.4808 MTAEAPKPARPCDYCGHSMAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTDTSVFCQNCDWEKHNPSLSDSLHQRRPLEGFTGCPSVSELLSVVGFGDLSKKSLLSSPQGSAADGFLGCEIEGFSDLFVWDAPSVVTLDDLISSSASSHSFQAMEVPPLPKNRKAACGRHREEILSQLRELARSEPLDLEQYVQPENLSSAFESDVEVDIYPYHEIKLLLHFNIYLAFLFPVPGLGLFSYGQARLLGCSFKPFNDAFLIVHGWHREMSEPMYQVVPPDPSLRTYTEEVPVKQSTSVGETHTFGDKGGNPSISLNSETLPTTPKAGACELTSQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKMEREH 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02920 399 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 11 395 - -
Vian2g02920 399 SMART bboxneu5 7 54 IPR000315 GO:0008270
Vian2g02920 399 SMART bboxneu5 55 97 IPR000315 GO:0008270
Vian2g02920 399 MobiDBLite consensus disorder prediction 311 346 - -
Vian2g02920 399 CDD Bbox1_BBX-like 11 54 - -
Vian2g02920 399 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Vian2g02920 399 MobiDBLite consensus disorder prediction 311 348 - -
Vian2g02920 399 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Vian2g02920 399 Pfam B-box zinc finger 9 52 IPR000315 GO:0008270
Vian2g02920 399 Pfam B-box zinc finger 54 97 IPR000315 GO:0008270
Vian2g02920 399 Pfam CCT motif 353 395 IPR010402 GO:0005515
Vian2g02920 399 CDD Bbox1_BBX-like 54 97 - -
Vian2g02920 399 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02920 Vian-Chr2 49902530 49905705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02920 4 205 C2C2-CO-like Transcription Factor Family AT2G47890 50.739 4.54e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vian2g02920 CCT 2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02920 - - gmx:100817838 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02920 2 49902530 49905705 Vian2g02920 2 49902530 49905705 ECH
Vian2g02920 2 49902530 49905705 Vian3g01949 3 23204942 23206685 PCT