Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02909 ATGGTGGAAAGAAGAAGAAAGCCTTTGATACTGTGTTCCACCAAACATGTCATCAATTCAACTGTTCCAACCGCCAATCTCTTCCACCATGATTCTTCTCCCTCCTTCTTCCGTTTTCTTGTCGGAATTCTCCGATTCTCCGACCTCACAAATCTCTCTGTCGACCACTCTTCCCTGCTTGCCGTCTCCACCCCTCTTCTCAAAACCCTCTCCATCACTTCAGGCTCACCGGTTCTTGTCAAGAATGTTGGCACCAACACACAGAAAATTGCAGTGGCTGTTGCTTTGGATCCACCAGGCACCACGGCTAACACAGACTCACAGTCTTCTAGTCCTTCTTCTTCTTCTCCTCGAATAATGCTTCTTTTTCCTTCTTGTCATTTCCCTTTTAATGGTTCTGTGTTAGATGATCAAATAGCCTATGTATCGCCTCTTTTAGCCTTTAACCTTAACTTGCACGTGGCGTGCTTAAAATCCATTCTTCACCACGGGCAAGAGGCTCTGGCTTCTTATTTCGGTCCTCGAGATAAAAGGGGTGATGAGGATGCTGCTAAAATAACTGTGGATTCTGTCATCGACGTAGAATTGGAACCACTTGCTCTGCCTCCAAAGTTTGCCTCTCTTCTGAGGGTTTCTTTTGTGAAGATACCAGAATGTGGCATCCTTGAATCTATTAGATCAAGTTCACCTTTTGAATCAGAAGAGCGGCAAGACATGATCGACTTGTCATTGCAAAAGTACTTTGAAGTCGACAGGTACTTGTCCAAGGGAGATGTTTTTGGGATTAACATAAGTTGGAATTGCAATTCCCCCATTTGCGTTCCTTGTAACCAAAGATCATTAAATCAAAATGACAACCTTATCTGTTTCAAGGTTGTTGGTATGGAACCATCAGATGAACAGTTTTTTCGTGTCAATAACACCTTAACTGCTCTTGTGCTGGTAGGGAGTTCTCCATCCGCACTCCCTCCAGATTTGTTAATTGGTGAACCTGGAGGACCGGTGCCTTTGCGAGGGGATACTGTGAACATCTTGGCTTCGACACTCACACCAACTTTCTGTCCATCAGTGCTTTCTTCCAAGTTTAGGGTGTCTGTTCTATTGTATGGTTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTTGTCGACTTGGCTTGCATGTGGTGGAATATAACTGTCATGATCTTATGGTGTCTGATAGAACATCTGTTGCTCTAGCACAAGCTTTCAAGACAGCTCGAAGGTACTCGCCAGCAATACTTCTTCTTCGTCATTTTGATGTATTTCGAGAATCACAATCGCCTGAGGGTTCACCATATGATCAAAGAGGAAATACATCTGAAGTTGCTGCAGTTATTAGGAAATTCACTGAGCCCGTCAGTGAACAACATGATAGTAATTCCCTGGGGAAATCAAACGTTGAATCTGTGGAGACGAGTGCTGAAAAGGCAAGTGGACATCAGGTCCTATTGATTGCTGCTGCTGACAGTTCAGAAGGTCTTCCATCAACTATCAGACGCTGTTTTAGCCACGAAATAAGCATGGGGCCTTTGACTGAAGAGCAAAGAGCTGAAATGCTATTACAGTCATTGCAAAGTTTTTCTGAACTCTTCTCTAATACTGATTCAGAAGCTTTAGTAAAAGAAATAGTTGGACAGACATCTGGTTACATGCCCAGAGATATTCGTGCTTTAATTGCTGATGCCGGTGCCAACTTATTTCCGAGAAATAATGCTAAAGTAGACAAAGACGTGTCTGATGATGTAGATAGTTTATTTAATTCCAAGATGGCAGAGGACACCAATCACGGGAAAGTTTCACATCAGATTCCTGGGAAAGAAGACTTGTTGAATGCTTTGGAGCGATCAAAGAAAAGAAATGCGTCAGCATTGGGTACTCCAAAGGTTCCAAACGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATTCTGGATACTGTTCAGTTACCTCTCTTGCATAAAGATCTATTTGCATCTGGATTACGCAAGCGATCCGGTGTTCTTTTGTACGGTCCCCCTGGAACTGGCAAAACATTATTGGCAAAAGCTGTTGCTACAGAATGTTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATTGGAGAGTCTGAAAAGAATGTTCGAGACATTTTCCAGAAGGCAAGATCTGCACGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCACTTGCACCAGCTCGGGGTGCTTCTGGAGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGACGGCTTAAGTGATTCAACACAGGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCCCTTCTGCGCCCTGGTCGATTTGATAAACTACTGTATGTTGGAGTTAACTCTGATGCATCTTACAGGGAACGGGTGCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTCTCACTTTACTCCATTGCAAAAAAATCTCCACCAAACTTCACTGGTGCAGACATGTATGCCTTGTGTGCAGACGCTTGGTTCCATGCTGCAAAGAGAAAAGTTTTGAGTGCAAATCCAGAGTCGTCCAGCAAAGACAATGAAGCAGATTCTGTTGTTGTTCAGTATGATGACTTTGTCCAGGTCTTAGAAGAGCTGTCACCTTCCCTCTCAATAGCTGAGCTTAAGAAGTACGAACAACTGAGAGATCAGTTTGAAGGCACCTCTAGATGA 2784 0.4321 MVERRRKPLILCSTKHVINSTVPTANLFHHDSSPSFFRFLVGILRFSDLTNLSVDHSSLLAVSTPLLKTLSITSGSPVLVKNVGTNTQKIAVAVALDPPGTTANTDSQSSSPSSSSPRIMLLFPSCHFPFNGSVLDDQIAYVSPLLAFNLNLHVACLKSILHHGQEALASYFGPRDKRGDEDAAKITVDSVIDVELEPLALPPKFASLLRVSFVKIPECGILESIRSSSPFESEERQDMIDLSLQKYFEVDRYLSKGDVFGINISWNCNSPICVPCNQRSLNQNDNLICFKVVGMEPSDEQFFRVNNTLTALVLVGSSPSALPPDLLIGEPGGPVPLRGDTVNILASTLTPTFCPSVLSSKFRVSVLLYGLAGCGKRTVVRYVACRLGLHVVEYNCHDLMVSDRTSVALAQAFKTARRYSPAILLLRHFDVFRESQSPEGSPYDQRGNTSEVAAVIRKFTEPVSEQHDSNSLGKSNVESVETSAEKASGHQVLLIAAADSSEGLPSTIRRCFSHEISMGPLTEEQRAEMLLQSLQSFSELFSNTDSEALVKEIVGQTSGYMPRDIRALIADAGANLFPRNNAKVDKDVSDDVDSLFNSKMAEDTNHGKVSHQIPGKEDLLNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKSPPNFTGADMYALCADAWFHAAKRKVLSANPESSSKDNEADSVVVQYDDFVQVLEELSPSLSIAELKKYEQLRDQFEGTSR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02909 927 Gene3D - 351 544 IPR027417 -
Vian2g02909 927 Gene3D - 815 901 - -
Vian2g02909 927 PANTHER AAA-FAMILY ATPASE 58 924 - -
Vian2g02909 927 CDD RecA-like_PEX6_r2 653 812 IPR047533 -
Vian2g02909 927 ProSitePatterns AAA-protein family signature. 784 802 IPR003960 GO:0005524|GO:0016887
Vian2g02909 927 Gene3D - 639 916 IPR027417 -
Vian2g02909 927 Pfam ATPase family associated with various cellular activities (AAA) 366 517 IPR003959 GO:0005524|GO:0016887
Vian2g02909 927 Pfam ATPase family associated with various cellular activities (AAA) 681 813 IPR003959 GO:0005524|GO:0016887
Vian2g02909 927 SMART AAA_5 362 522 IPR003593 GO:0016887
Vian2g02909 927 SMART AAA_5 677 817 IPR003593 GO:0016887
Vian2g02909 927 FunFam Peroxisome biogenesis protein 6 335 519 - -
Vian2g02909 927 FunFam Peroxisome biogenesis protein 6 815 901 - -
Vian2g02909 927 FunFam Peroxisomal biogenesis factor 6 639 828 - -
Vian2g02909 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 591 IPR027417 -
Vian2g02909 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 921 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02909 Vian-Chr2 49826383 49832943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02909 647 872 Calmodulin-binding Proteins AT3G56690 39.207 2.65e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02909 K13339 - gmx:100820183 1576.22