Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02906 ATGGATGCGTGGAACGAAGATTTTGCGGAGCAGGAGATTGGGAACTCCGCGGAATCGTTCCAAAAGTTTTTACTTTCGCAGAGAGATCTCTTCCACAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACGCAATGCAAACTCACCGGCGTCAACCCTCTCTCTCAAGAAATGGCAGCTGGTGCTTTGTCAATAAAAATTGGAAAAAGACCTAGGGATTTATTGAATCCAAAGGCTGTAAATTACATGCAATCAATTTTTTCGATTAAAGATTCTATTAGCAAAAAGGAGTTGCGCGAGATCAGTGCTTTATTTGGTGTCACAGCGACGCAGGTGCGTGACTTTTTCACTGGGCAGCGCTCAAGAGTGAGGAGACTAGTGCAGCTTTCAAAAGAGAGGGCACTAGGTTCCAATTCTTGTGAAGATCCTCACGATGATAAAATAATTCCTGATCCTGTTAGACTAATTAATCCAGCTTCCGTAAACTCTACTGTCCCATCCAATGCTGAAGAAGCATCTTGTTCAACACAGGATGCAGCCTTGCCTGACCTAGATGATTCAGATAAACATTTTGTTGATAATATTTTTAGTTTAATGCAACAAGAAGAGACATTTTCCGGGCAAGAGAGATTGATGGAGTGGATATTGACGATACAGAATTTTTCAGTATTGTTGTGGTTTTTGAGCAGAGGGGGTGGAATAACTTTAGCTACTTGGTTGAGTAAGGCAACTGCTGAGGAGCAAACCAGTGTCCTTCTTCTTATCTTGAAGGTTCTTTGTCATTTGCCTTTACATAAAGCCATTCCCATGCACATATCAGCTATATTGCAGAGTGTAAATAAACTTCGGTTCTACAGGACATCAGACATATCAAACAGGGCAAGGATTTTGTTATCAAAGTGGAGCAAATTATTAGCGAGGAACCAAGTAATAAAGAAGCCCAATGGTGTTAGGCCTTCTAGTGATGGGCATAAAGAGTTGATTTGTCAGAGTATTGGTCAATTTGTGGGCTCTGAATCATGGCATTCCAATATTGATGTTCCTGAAGACTTTCTTTCACTTTCAAGCGAATCTCTGGACAATTTCAGGAAAGTGGGATCTCCACAAGCTGCGAAATTGTTGCCTCCTAGCTTGGATGATTCTAATAAAAAGTCTACACTTGGTGTTATTTCATCTCAATCTAGAGAGCGCAGAAAAGTGCAATTGGTGGAACAGCCAGGCCAAAAGTCAGTTAGCAGAAGTTCACAGGTGACAAGAGCAGGGTCTGTAAGTCAAGGTCGGCCCATGTCCGCTGATGATATCCAGAAAGCAAAAATGCGTGCTTTATTTATGCAGAGTAAGTATGGGAAATCCAGTTCAAAAGAAAGTAAAGAAACAAAGATTGATAGTCTGAATAAACAACCTCAGACAATTCCTGCCAGTATTGCAGCTTGCTCTTCTAAAGTTCCTACTCCTCCCAAAATTGATGAAAACAAGAAACCTTTGTTACTTGCCTCTAAAACCAGCAATAGGCTGGAAGCTTATTCAAAACCGAAAGTGGATGTGAAGGAACCTCTCTGGGAGAAGTGCACGAGGATTCAGATACCTTGGAAAACACCAGCAGAAGTGGAACTTAAAGATAGCTGGAGCGTTGGTGGCGGGGAAAACAGCAAAGAGGTTGATGTCCAGAGAAACAGAGACCGCAGGGAAAAGGAAACTATATATAAAACTATCCAAGAAATCCCACCTAACCCCAAGGAGCCTTGGGACCTTGAAATGGACTATGATGACACTTTGACGTTGGAAATTCCTATTGAACAGTTGCCAGATGGTGACGGTGCAGACATAACAGTTTCCCCCAATCAGGTTGCTGAGCATACTGTTCAAGGGGTGGCCTCCACTTCTTCGACAAGTGTGGCTCCTGCTGAGCCTGATTTAGAATTGCTTGCCGTACTGCTGAAAAATCCAGAGTTAGTATTTGCCTTAACTTCTGGACAAGCGGGTAGCATACCGGGTGAAGACGTAGTGAAGCTGCTTGACATGATCAAGAGAGGAGGTGCGAACTTGGGTTTAAGTGAAAATACAAATGGGAGCTATGGCACGAGTGTAAAAGCCCCGGATAAGGTGGAAGTTTCGCTCCCATCTCCAACCCCTTTAAGCGATCCAAGAACGAATGGATGGAGCTCAGAAGCATCAAAAAACCCCTTTTCACGGCGAAGTGTAGCATCTGATAGAATTATCCAGAACCATGCTGCAGTGACAACTACCAACTTACTAACTCAGATTCCCATGACTAGCACTACTGCACTAAGGCAACAGCCAGCAGTAGTGGTTTCATCTTCGAGGCATCTCTCAAGCACAACAGTTTCTCCATATTCACTGCATCAGGCAACTAATGTTAATCCTGAAAAGCAACAACCACTGGGGCATGTACAAATACCATCCTCAAATGTAGGTTTAACCATGAAGAAGAACTTAATCACTACCAATGCACCTTCAGTTAACTATTCTGGCACTCATTCAGCTGTAGCAATGCGGGGTAATGGCACCAATTATGTAAAACCCGTACATAGTATGAGTGTACAACACGAGGGTGTGTCTAATTCCTTCCCACAGTCATCCTTCAAGCTACCCTCACCAACGCCGTCAAATTCAGCCTCACAGCAGCAAAGACATCAACAACATATAGTCCAGGAAGCCCATTACACCGAACCTCCTTATCGTAACCCTAGCCGTTCCTACCCACCACAAACCGAAAAATCAGACCATGGGTCTGAAAGCGCGTGGAGAATTAGGCAAGATGTTCCATTCAGTTCTCAAAGAAATCCTAACAACTATAATACAATGGTTGGGGGATCCAGGCAATCTGGTTTTTGGGATAGAAATAATCAAGGAGGGGAAGATTTTGAATCATGGAGTCCTGAAAATAGTCCAACTAGAAATCCTAGGTATATGCCAGGTAGAAACTACCCAGATTCCAGAGTGAATCATGGAAGAAACCATAGACCTGAATGGTCAAGACAGAGGGGTTCTTCTGAACACTGGGACCCTGACAGGCAGGGAAATAGAAAGTGGCATGATCAGAGGCGATAA 3072 0.4339 MDAWNEDFAEQEIGNSAESFQKFLLSQRDLFHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSIFSIKDSISKKELREISALFGVTATQVRDFFTGQRSRVRRLVQLSKERALGSNSCEDPHDDKIIPDPVRLINPASVNSTVPSNAEEASCSTQDAALPDLDDSDKHFVDNIFSLMQQEETFSGQERLMEWILTIQNFSVLLWFLSRGGGITLATWLSKATAEEQTSVLLLILKVLCHLPLHKAIPMHISAILQSVNKLRFYRTSDISNRARILLSKWSKLLARNQVIKKPNGVRPSSDGHKELICQSIGQFVGSESWHSNIDVPEDFLSLSSESLDNFRKVGSPQAAKLLPPSLDDSNKKSTLGVISSQSRERRKVQLVEQPGQKSVSRSSQVTRAGSVSQGRPMSADDIQKAKMRALFMQSKYGKSSSKESKETKIDSLNKQPQTIPASIAACSSKVPTPPKIDENKKPLLLASKTSNRLEAYSKPKVDVKEPLWEKCTRIQIPWKTPAEVELKDSWSVGGGENSKEVDVQRNRDRREKETIYKTIQEIPPNPKEPWDLEMDYDDTLTLEIPIEQLPDGDGADITVSPNQVAEHTVQGVASTSSTSVAPAEPDLELLAVLLKNPELVFALTSGQAGSIPGEDVVKLLDMIKRGGANLGLSENTNGSYGTSVKAPDKVEVSLPSPTPLSDPRTNGWSSEASKNPFSRRSVASDRIIQNHAAVTTTNLLTQIPMTSTTALRQQPAVVVSSSRHLSSTTVSPYSLHQATNVNPEKQQPLGHVQIPSSNVGLTMKKNLITTNAPSVNYSGTHSAVAMRGNGTNYVKPVHSMSVQHEGVSNSFPQSSFKLPSPTPSNSASQQQRHQQHIVQEAHYTEPPYRNPSRSYPPQTEKSDHGSESAWRIRQDVPFSSQRNPNNYNTMVGGSRQSGFWDRNNQGGEDFESWSPENSPTRNPRYMPGRNYPDSRVNHGRNHRPEWSRQRGSSEHWDPDRQGNRKWHDQRR 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02906 1023 MobiDBLite consensus disorder prediction 447 468 - -
Vian2g02906 1023 MobiDBLite consensus disorder prediction 685 728 - -
Vian2g02906 1023 MobiDBLite consensus disorder prediction 541 561 - -
Vian2g02906 1023 MobiDBLite consensus disorder prediction 856 889 - -
Vian2g02906 1023 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 230 309 IPR035441 -
Vian2g02906 1023 SMART HOX_1 68 130 IPR001356 GO:0003677
Vian2g02906 1023 MobiDBLite consensus disorder prediction 405 429 - -
Vian2g02906 1023 MobiDBLite consensus disorder prediction 925 976 - -
Vian2g02906 1023 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 106 1004 - -
Vian2g02906 1023 Gene3D - 66 127 - -
Vian2g02906 1023 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 234 317 IPR035441 -
Vian2g02906 1023 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Vian2g02906 1023 MobiDBLite consensus disorder prediction 370 431 - -
Vian2g02906 1023 MobiDBLite consensus disorder prediction 710 728 - -
Vian2g02906 1023 SUPERFAMILY Homeodomain-like 69 130 IPR009057 -
Vian2g02906 1023 MobiDBLite consensus disorder prediction 379 396 - -
Vian2g02906 1023 MobiDBLite consensus disorder prediction 856 1023 - -
Vian2g02906 1023 MobiDBLite consensus disorder prediction 987 1023 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02906 Vian-Chr2 49791204 49799200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02906 464 732 Homeobox Transcription Factor Family AT4G02560 45.018 8.72e-50 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02906 - - gmx:100806633 1635.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02906 2 49791204 49799200 Vian2g02906 2 49791204 49799200 ECH