Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02885 ATGTTCTTTTCATCTCAAACATGGATAAAATCCTTCTCCTGTGCATTCCCCGTGAAGCAAACCTCTGGTGACATGTTTATCTCAACTATGCTTCAATGGCTGAGATTTTTCTTCCTCTCACCGTGTCCTCAAAGAACTATATTATCTTTCGTCGATGTCGTGTTCCTCTTGTTTCTCTTCGTGTTTACTATCACCAAGCTCTGGAAAAGGCTCACCTCCCATGGCGGTATCGGCACTCACCTCAATGAACCACTCGTCAGAAACAGCAGATCCATTTTCTTAACTATTCGGTTCAAGCTAACCTTAACCGCAGAGGTTGTTTTGACTATACTTTACACGTTTGCTACCGTTCTTGCGTTTAGCAGTTCCTCCAAGGTGCCGTGGAAGCAAGTTGACGACGTGTTTTGGACAGTCCACGCCATAACACATGCGGTGCTTGCATTCGTGATCATCCACGAGAAAATATTTGAAGCTGTTACTCACCCTCTTGCGCTTCGTGTTTATTGGGTTGTGAATTTCTTTATTACTTCGTTGTTCACAGTTTCTGCTGTTATGCGTTTGGTCATAATCGTGGACGTGAATGAAAGCAACGACTTCAAGGTGGATGACGTGGTCTCTTTCATTTCACTCCCTCTGTCGCTATTTCTTCTTTTTATTGGGGTTAAAGGATTCACCGGTATTGTCTTGTCGACAGAAGAAAGTCGACAACTTGTTGAGGAGGAAACTAGGTTGTACGATCGGAGTGAGGGAAAGTCGGAGGTTACTAGCTTCGCTTCAGCTTCTATGTTATCTAAGGCTTTTTTTATGTGGATAAATCCATTGTTGAGTAAAGGGTACAAGTCCGCAATGAAGACTAATGATGTTCCAACGCTTTCTCCACAGCACAGAGCTGAGAGGATGTCATCTATTTTTGAATCAAAATGGCCTAAATCAAACGAGAAGTCGAAGCACCTGGTTAGAATGACTTTGCTCCGTTGCTTTTGGAAGGAGTTGGCCTTCAATGCCGTGCTTGCAATCTTTAGGCTCTGTGTCATGTTTGTGGGGCCGGTTCTGATTCAAAGTTTTGTGGATTTCACATCAGGGAAGAGAAGTTCTGAATATGAAGGGTACTACCTTGTGTTGATTCTTCTCGTTGCTAAGTTCATTGAAGTTGTGAGTACTCATCATTTCAACTTCCAATTGATCACTGCTTTTCTTGGTCTTCTTGGTGTTTTTGTGTTTGCTGTGATTGGTACCCGCAGGAACAACCGCTTCCAGTATAATGTGATGAAGAATCGTGACTCGAGAATGAAAGCTGTGAATGAGACGCTTAATTACATGCGTGTGATCAAGTTTCAGGCCTGGGAGGAACATTTCAACCAGAGAATTATGGGATTCCGTGAGACTGAATATGGATGGCTCTCCAAGTTGATGTTCTCAATATGTGGCAATATTGTTGTGATGTGGAGCACGCCCTTGTTGATATCAACTCTCACGTTTGGAACGGCTCTTTTGCTGGGAGTTCAACTTGATGCTGCTACGGTCTTCACAACAACAACTGTGTTCAAGATATTGCAGGAGCCCATTAGGACATTCCCACAGTCTATGATATCTCTCTCACAAGCATTAATATCATTGGAGAGACTAGATAAGTTCATGTTGAGCAGGGAATTGTTGGATGATTCAACTGAGAGAGAAGAAGGATGTGGCGGACAAACATCAGTGGAAATCATAGATGGGACTTTTAGTTGGGATGATGATAACACGCAGCAGGACTTGAAAAATATCAATTTGGAGATAAAAAAGGGAGAGATTTCAGCAATTGTTGGGACTGTAGGGTCAGGAAAGTCCTCTCTTCTCGCATCAATTCTTGGAGAGTTGCGTAAGATTTCCGGAAAGGTTCGGGTTTGTGGAAGTGTTGCTTATGTTGCACAAACATCTTGGATTCAGAATAGAACTATTGAAGAAAACATTCTCTTTGGTTTACCAATGGACAGGCAGAGGTACAATGAAGCTATCAGGGTTTGTTGTTTGGAGAAAGACTTGGAAATGATGGATTATGGGGATCAGACAGAAATTGGAGAGCGTGGTATCAACCTGAGTGGAGGCCAAAAGCAGCGTATACAACTTGCCAGGGCTGTTTATCAAGACTGTGATGTATATCTTCTCGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGTTCCGAAATATTTAAGGAATGTGTCAGGGGAGCTCTAAAAGGCAAGACCACTGTTCTTGTTACTCACCAAGTAGATTTCCTACATAATGTGGATCAGATATTAGTGATGAGGGACGGCATGATAATCCAATCAGGAAAGTACAATGATCTAGTTGATTCTGGACTGGATTTTAAAGCTCTGGTGGTTGCTCATGAGACCTCCATGGAACTGGTGGAGCAGAGTGTGGTCGTGCCCGCTGAAAATTTGAACAGGCCAACAAACTCTTCAACGGTGACTTCTACTTACAAGGGAACCAGTGGTGAAAACAATTCTCTTGAACAGGCCGTGTCTAGCAAGAAAAGTTCTAAACTCATCAAAGAAGAGGAAAGAGAAACCGGCAAAGTGAGCTTACATATCTATAAACTCTACTGCACTGAGGCTTTTGGCTGGTGGGGAATTACTTTAGTATTTGTTCTTTCTTTGTTATGGCAAGGATCTTTGATGGCAAGTGATTATTGGCTGGCGTATGAAACCTCAATGGAAAGTGGACTGTTTAACCCTTCTCTCTTCATGTCCATTTATACAATTATTACCGCTGTTTCGGTTATCTTGGTGGTGACGAGAACTTACTTCTTTACACTCTTGGGGCTAAAGACTGCACAAATTTTCTTCACACAAATTCTTCGTAGCATCTTGCATGCGCCTATGTCTTTCTTTGACACTACTCCGTCTGGGAGAATTCTAAGCAGGGCTTCCTCTGATCAGAGCAATGTTGATGTCCTACTCCCCTTGTTCACGGGAGTTGTCATTGCCATGTATATTACAGTGCTCAGCATCTTCATCGTCACCTGTCAAAATTCATGGCCAACAGTGTTTTTGATATTCCCTCTTATTTTGTTGAATATATGGTATCGGGGTTACTATCTAGCAACATCTCGTGAATTAACTCGTCTGGATTCAATTACCAAAGCACCAGTTATTCATCACTTCTCTGAAAGCATTGCTGGGGTCATGACAATCCGTGCATTCAGACAACAGAAGAATTTTTGTGAAGAAAATCTCAAACGGGTGAATGCTAATTTATGTATGGATTTCCACAACTATAGCTGCAATGTGTGGTTGGGAGTGCGCTTAGAGTTGCTTGGAAGCTTTGTCTTTTGCATTTCTGCATTGTTCATGATCATTTTACCCAGTAGTATCATAAAGCCAGATATCAAAGACTTGCAGAGCTTGGAGCGTTGTCAGCTAAAGGATGTTGTTGCTGCTAAGCCTGAAAAACTTGACTCTTCAGGGATAGCGAAAGAATATGACAAGCCTTCCAATTTGCTTCAGAGAGAATCTCTGTTTGGGGCATTAGTTCAAGAATATGCCAACCGATCCACTGAACTATAA 3555 0.4225 MFFSSQTWIKSFSCAFPVKQTSGDMFISTMLQWLRFFFLSPCPQRTILSFVDVVFLLFLFVFTITKLWKRLTSHGGIGTHLNEPLVRNSRSIFLTIRFKLTLTAEVVLTILYTFATVLAFSSSSKVPWKQVDDVFWTVHAITHAVLAFVIIHEKIFEAVTHPLALRVYWVVNFFITSLFTVSAVMRLVIIVDVNESNDFKVDDVVSFISLPLSLFLLFIGVKGFTGIVLSTEESRQLVEEETRLYDRSEGKSEVTSFASASMLSKAFFMWINPLLSKGYKSAMKTNDVPTLSPQHRAERMSSIFESKWPKSNEKSKHLVRMTLLRCFWKELAFNAVLAIFRLCVMFVGPVLIQSFVDFTSGKRSSEYEGYYLVLILLVAKFIEVVSTHHFNFQLITAFLGLLGVFVFAVIGTRRNNRFQYNVMKNRDSRMKAVNETLNYMRVIKFQAWEEHFNQRIMGFRETEYGWLSKLMFSICGNIVVMWSTPLLISTLTFGTALLLGVQLDAATVFTTTTVFKILQEPIRTFPQSMISLSQALISLERLDKFMLSRELLDDSTEREEGCGGQTSVEIIDGTFSWDDDNTQQDLKNINLEIKKGEISAIVGTVGSGKSSLLASILGELRKISGKVRVCGSVAYVAQTSWIQNRTIEENILFGLPMDRQRYNEAIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDVYLLDDVFSAVDAHTGSEIFKECVRGALKGKTTVLVTHQVDFLHNVDQILVMRDGMIIQSGKYNDLVDSGLDFKALVVAHETSMELVEQSVVVPAENLNRPTNSSTVTSTYKGTSGENNSLEQAVSSKKSSKLIKEEERETGKVSLHIYKLYCTEAFGWWGITLVFVLSLLWQGSLMASDYWLAYETSMESGLFNPSLFMSIYTIITAVSVILVVTRTYFFTLLGLKTAQIFFTQILRSILHAPMSFFDTTPSGRILSRASSDQSNVDVLLPLFTGVVIAMYITVLSIFIVTCQNSWPTVFLIFPLILLNIWYRGYYLATSRELTRLDSITKAPVIHHFSESIAGVMTIRAFRQQKNFCEENLKRVNANLCMDFHNYSCNVWLGVRLELLGSFVFCISALFMIILPSSIIKPDIKDLQSLERCQLKDVVAAKPEKLDSSGIAKEYDKPSNLLQRESLFGALVQEYANRSTEL 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02885 1184 SUPERFAMILY ABC transporter transmembrane region 322 546 IPR036640 GO:0005524|GO:0016020
Vian2g02885 1184 CDD ABCC_MRP_domain1 568 767 - -
Vian2g02885 1184 Gene3D - 547 809 IPR027417 -
Vian2g02885 1184 MobiDBLite consensus disorder prediction 810 832 - -
Vian2g02885 1184 FunFam ABC transporter C family member 5 837 1141 - -
Vian2g02885 1184 Pfam ABC transporter 586 719 IPR003439 GO:0005524
Vian2g02885 1184 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 568 791 IPR003439 GO:0005524
Vian2g02885 1184 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 258 394 - -
Vian2g02885 1184 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 876 1117 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g02885 1184 SUPERFAMILY ABC transporter transmembrane region 871 1117 IPR036640 GO:0005524|GO:0016020
Vian2g02885 1184 Gene3D ABC transporter type 1, transmembrane domain 835 1122 IPR036640 GO:0005524|GO:0016020
Vian2g02885 1184 Gene3D ABC transporter type 1, transmembrane domain 389 546 IPR036640 GO:0005524|GO:0016020
Vian2g02885 1184 CDD ABC_6TM_ABCC_D2 874 1121 IPR044726 GO:0140359
Vian2g02885 1184 ProSitePatterns ABC transporters family signature. 693 707 IPR017871 GO:0005524|GO:0016887
Vian2g02885 1184 Pfam ABC transporter transmembrane region 390 521 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g02885 1184 Pfam ABC transporter transmembrane region 875 1115 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g02885 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 566 788 IPR027417 -
Vian2g02885 1184 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 395 534 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g02885 1184 Coils Coil 1061 1081 - -
Vian2g02885 1184 SMART AAA_5 595 776 IPR003593 GO:0016887
Vian2g02885 1184 FunFam ABC transporter C family member 4 551 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02885 Vian-Chr2 49648114 49654049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02885 524 784 Calmodulin-binding Proteins AT2G36910 29.348 2.59e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02885 - K05666 gmx:100808752 1275.38