Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02884 ATGTCCCTTGCATCTTCAACCCTCTCTTGTGCATTCCCTGTGAAACAAACCTCCGAGGACACGTTTGTCTCAACTATGCTTCAATGGCTGAGATATATTTTTCTCACACCTTGTCCTCAAAGAGCTATATTGTCTTTCGTTGATGTCGTGCTCCTCGTGTTTCTCTTCGTGTTTGCTGCCACCAAGCTCTGGAAAAGGTCCACCTTCAATGGTGGCTCCAATACCGACCTCAGCAGACCATTCATCAGAAAGAACAGACCCGTTTTCTCAATAACTGTGCGGTTTAAGTTAACCATAACTGTAGTGGTTGTTTTGACTATACTCTACACGGTTGCTTCTGTTCTTACGTTTAGCAGTTCCGCCATGGCGCCGTGGAAGCAGGTTGACGAGGTGTTTTGGTTAGTCCAAGCCATAACACATGCTGTGCTTGCATTCTTCATAATCCACGAGAAAAGGTTTCAGGTCGTTGCACACCCTCTATCCGTTCGAGTTTATTGGATTGTATCTTTCTTTGTCATTTCTTTGTTCACTGTTTCTGCGGTTATACGTTTGGTCTCGGGGGACGTGGATGAAGCCTTCGGCTTCGGGGTGGACGAGGTGGTCTCTTTCATTTCGTTCCCGCTGTCGTTATTTCTTCTTTTTGTGGCGGTTAAAGGATCCACCGGCATTGTTTTGGCTACAGAAGAAACACGACCACTTGTGGATGGAAAAGCTAAGTTGCATGATGGTACTGAGAGAAAATCCGAGGTTACTGGTTTTGCTTCAGCTTCTCTATTATCCAAGGCTTTTTGGATTTGGATAAACCCCTTACTGAGTAAAGGGTACAAGTCCGTGCTGAAGATTGATGAGATTCCAACGCTTTCTCCGGAGCATAGAGCTGAGAGAATGTCATCCATTTTTGAATCTAAATGGCCTATGTCAAACGAGACATCAAAGCATCCTGTTATAATGACTTTGCTTCGGTGCTTTTGGAAGGAGTTAGTCTTCAATGCCGTGCTTGCAATCATTAGGCTCTGTGTCATGTTTGTGGGGCCGATTCTGATACAAAGTTTTGTGGATTTCACATCAGGGAAGAGAAGCTCTGAATATGAAGGATACTACCTCGTGTTGATTCTTTTCGTTGCTAAGTTCATTGAAGTCATGGCTACTCATCATTTCAACTTCCAAGCTCAAAAACTTGGGATGCTCATACGCTCCACTCTTATCTCCTCTTTGTATAGAAAGGGGTTAAAGCTATCATTCTCTTCTCGGAAGGAACATGGAGTTGGGACAATTGTGAATTACATGGCTGTGGATACCCAGCAACTCTCTGACATGATGCTCCAGTTACACGCTGTGTGGATGATGCCACTCCAAGTTGGTATTGGCTTGGTTCTGCTTTACAATTGTTTAGGTGTCTCAGTTATAGGCGCGTTTCTTGCTCTGCTTGGTGTTTTTGTCTATTCTGTGATGGGCAACCAAAGAAACAACAAGTTCCAACAAAATCTGATGGTGAGCCGGGACTCCAAAATGAAAGCTGTGAATGAGATGCTTAGCTACATGCGTGTGATCAAGTATCAGGCCTGGGAGGAACATTTCAATCAGAGAATTTTGGGTTTCCGTGAAACGGAGTATGGGTGGCTCTCCAAGCTGCTGTTCTCAATTTGTGGCACAATTGTTGTGTTGTGGAGCACACCGTTTTTGGCGTCAACTCTTACATTTGGAACGGCTATTTTGTTGGGAGTTCAACTTGATGCAGGCACAGTGTTCACTACAACAGCTGTGTTCAGGATATTGCAGGAGCCTATTAGGACATTCCCACAGTCTATGATATCTCTTTCACAAGCAAGGATATCACTGGAGAGGTTAGACAGGTTCATGTTGAGCGGAGAATTGTCAAATGATTCAGTTGAGAGAGAGGACGGATGTGGTGGACAGACAGCCGTGGAAATCATACATGGAACTTTTAGTTGGGATGATGATAATACTCAGCAGGACTTGAAAAATATCAATTTGAAAATTAAAAAGGGTGAGCTTACAGCAATTGTTGGGACCGTAGGGTCAGGAAAGTCGTCCCTTCTTGCATCAATTCTTGGAGAGATGCACAAGATTTCTGGAAAGGTTCGGGTTTTTGGGAGTGTTGCTTATGTTGCACAGACATGTTGGATTCAAAATGGGACCATTGAAGAAAACATTCTCTTCGGTTTACCTATGGACAGAGAGAGGTATGATGAAGTTATCAGGGTGTGCTGTTTGGAGAAAGATTTGGAAATGATGGATTATGGGGATCAGACAGAAATTGGAGAACGTGGTATCAACCTAAGCGGAGGCCAGAAGCAGCGTATACAACTTGCCAGGGCAGTGTATCAAGACTATGATGTATATCTTCTTGATGATGTTTTCAGTGCTGTTGATGCTCATACTGGTTCTGAAATATTTAAGGTGACGAGGGACGGTAAGATAGTTCAATCAGGGAAATATGATGATCTATTAGAGTCTGGAATGGATTTTAAAGCTCTCGTCGTTGCGCATGAGAGCTCCATGGAATTAGTGGAGCACAGTATGGTCATGCCAGGTGAAAATCTGAACAGACCAACGATGGCTCTAGAGACAGCTTCAATTAACAGGGGAACCAATGGTGAAAACAATTCTATTGATAAGCCTAAGTGTGGCAAGAAAAGCTCTAAACTCGTCCAAGAAGAGGAGAGAGCAACTGGAAAAGTGAGCTTACGTATGTATAAACTCTATTGCACTGAGGCGTTTGGGTGGTGGGGCATTACAATAGTATTGGTCCTGTCTTTGTTATGGCAAGTGTCTTTGATGGCAAGTGATTATTGGTTGGCATATGAAACCTCAGAAGAACGTGCTAAATTGTTTAACCCTTCTCTGTTCATCTACGTCTATGCAATTATTGCTGTTGTTTCCAGTGTTTTGTTAGTGGCAAGATCCTACTTCTTTACTCTCATGGGGCTAAGGACAGCACAATTATTCTTCACACAAATTCTTCATAGCATCTTGCATGCGCCCATGTCTTTCTTTGACACCACACCATCTGGAAGAATTCTAAGTAGGGCATCCACTGATCAAGCCAATCTTGATGTCCTTCTACCCTTATATATGGGAGCTATTATAATCATGCACTTATCGATGCTCGGCATCTTCATCATAACCTGTCAAAATTCTTGGCCAACGCTGATTTTGATAATTCCTCTTGTCTGGTTAAATATGTGGTACCGGGGTTACTATCTTGCATCATCTCGGGAATTTACTCGCATGGATTCAATTACCAAAGCCCCAGTTATTCATCACTTCTCTGAAAGCATTGCAGGGGTCATGACAATCCGTTCATTCAGAAAGCAAAAGATATTCTGTGATGAAAATCTGAAACGGGTGAATGGTAATTTGAGAATAGATTTCCACAACTATAGTTGTAATGAGTGGTTGGGATTTCGCTTAGAATTGATTGGAAGCTTTGTCTTTTGCATTTCTGCCATGTTCATGATCATCTTACCCAGCAATATCATAAAGCCAGAAAATGTCGGTTTATCTCTCTCTTATGGGTTGTCCTTAAACACTGTCTTGTTCTGGGCCGTATACATGAGTTGTTTCATCGAAAACAAGATGGTGTCTGTTGAGAGGATAAAGCAGTTTACAAATATTCCATCGGAACCAGCATGGAATATCAAGGATCACCTACCTCCTTCAAATTGGCCCGGTCAAGGCAATGTAGATATCAGAGACTTGCAGAGCTTGGAGCGTTGTCAGCTAAAAGATGTTGTTGCCGCTAAGCCGGAAAAACTTGACTCTTCAGTGGTGGAAAACGGAGAGAACTGGAGTGTGGGGCAAAGACAGTTGCTTTGTCTAGGGCGTGTTATACTTAAGAAAAGCCGACTTTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACTGATGGTGTTATTCAGAAGATCATAAGAGAGGAGTTTGCAGTATGCACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGACTGTAACAGAGTTTTAGTTGTAGACGCAGGGCGAGCGAAAGAATTTGATAAACCTTCCAATTTGCTTCAGAGAGAATCTCTGTTTGGGGCATTAGTTCAAGAATATGCCAACCGATCCAGTGGACTATAA 4131 0.4285 MSLASSTLSCAFPVKQTSEDTFVSTMLQWLRYIFLTPCPQRAILSFVDVVLLVFLFVFAATKLWKRSTFNGGSNTDLSRPFIRKNRPVFSITVRFKLTITVVVVLTILYTVASVLTFSSSAMAPWKQVDEVFWLVQAITHAVLAFFIIHEKRFQVVAHPLSVRVYWIVSFFVISLFTVSAVIRLVSGDVDEAFGFGVDEVVSFISFPLSLFLLFVAVKGSTGIVLATEETRPLVDGKAKLHDGTERKSEVTGFASASLLSKAFWIWINPLLSKGYKSVLKIDEIPTLSPEHRAERMSSIFESKWPMSNETSKHPVIMTLLRCFWKELVFNAVLAIIRLCVMFVGPILIQSFVDFTSGKRSSEYEGYYLVLILFVAKFIEVMATHHFNFQAQKLGMLIRSTLISSLYRKGLKLSFSSRKEHGVGTIVNYMAVDTQQLSDMMLQLHAVWMMPLQVGIGLVLLYNCLGVSVIGAFLALLGVFVYSVMGNQRNNKFQQNLMVSRDSKMKAVNEMLSYMRVIKYQAWEEHFNQRILGFRETEYGWLSKLLFSICGTIVVLWSTPFLASTLTFGTAILLGVQLDAGTVFTTTAVFRILQEPIRTFPQSMISLSQARISLERLDRFMLSGELSNDSVEREDGCGGQTAVEIIHGTFSWDDDNTQQDLKNINLKIKKGELTAIVGTVGSGKSSLLASILGEMHKISGKVRVFGSVAYVAQTCWIQNGTIEENILFGLPMDRERYDEVIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDYDVYLLDDVFSAVDAHTGSEIFKVTRDGKIVQSGKYDDLLESGMDFKALVVAHESSMELVEHSMVMPGENLNRPTMALETASINRGTNGENNSIDKPKCGKKSSKLVQEEERATGKVSLRMYKLYCTEAFGWWGITIVLVLSLLWQVSLMASDYWLAYETSEERAKLFNPSLFIYVYAIIAVVSSVLLVARSYFFTLMGLRTAQLFFTQILHSILHAPMSFFDTTPSGRILSRASTDQANLDVLLPLYMGAIIIMHLSMLGIFIITCQNSWPTLILIIPLVWLNMWYRGYYLASSREFTRMDSITKAPVIHHFSESIAGVMTIRSFRKQKIFCDENLKRVNGNLRIDFHNYSCNEWLGFRLELIGSFVFCISAMFMIILPSNIIKPENVGLSLSYGLSLNTVLFWAVYMSCFIENKMVSVERIKQFTNIPSEPAWNIKDHLPPSNWPGQGNVDIRDLQSLERCQLKDVVAAKPEKLDSSVVENGENWSVGQRQLLCLGRVILKKSRLLFMDEATASVDSQTDGVIQKIIREEFAVCTIISIAHRIPTVMDCNRVLVVDAGRAKEFDKPSNLLQRESLFGALVQEYANRSSGL 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02884 1376 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524|GO:0016887
Vian2g02884 1376 FunFam AGAP012735-PA 1249 1371 - -
Vian2g02884 1376 CDD ABC_6TM_ABCC_D1 329 616 IPR044746 GO:0140359
Vian2g02884 1376 FunFam ABC transporter C family member 5 883 1217 - -
Vian2g02884 1376 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 642 894 IPR003439 GO:0005524
Vian2g02884 1376 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 921 1199 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g02884 1376 CDD ABCC_MRP_domain1 642 807 - -
Vian2g02884 1376 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 331 608 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g02884 1376 FunFam ABC transporter C family member 10 311 624 - -
Vian2g02884 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 833 IPR027417 -
Vian2g02884 1376 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1116 1368 IPR003439 GO:0005524
Vian2g02884 1376 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 254 1248 - -
Vian2g02884 1376 Pfam ABC transporter 1258 1299 IPR003439 GO:0005524
Vian2g02884 1376 SMART AAA_5 669 854 IPR003593 GO:0016887
Vian2g02884 1376 FunFam Multidrug resistance-associated protein 1 624 810 - -
Vian2g02884 1376 CDD ABC_6TM_ABCC_D2 919 1211 IPR044726 GO:0140359
Vian2g02884 1376 Pfam ABC transporter transmembrane region 328 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g02884 1376 Pfam ABC transporter transmembrane region 921 1172 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g02884 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1242 1367 IPR027417 -
Vian2g02884 1376 Gene3D - 624 850 IPR027417 -
Vian2g02884 1376 Gene3D ABC transporter type 1, transmembrane domain 299 623 IPR036640 GO:0005524|GO:0016020
Vian2g02884 1376 Gene3D ABC transporter type 1, transmembrane domain 882 1212 IPR036640 GO:0005524|GO:0016020
Vian2g02884 1376 SUPERFAMILY ABC transporter transmembrane region 916 1216 IPR036640 GO:0005524|GO:0016020
Vian2g02884 1376 SUPERFAMILY ABC transporter transmembrane region 316 616 IPR036640 GO:0005524|GO:0016020
Vian2g02884 1376 MobiDBLite consensus disorder prediction 868 889 - -
Vian2g02884 1376 Gene3D - 1213 1374 IPR027417 -
Vian2g02884 1376 Pfam ABC transporter 660 793 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02884 Vian-Chr2 49640416 49646533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02884 598 829 Calmodulin-binding Proteins AT2G36910 28.881 1.55e-18 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02884 - K05666 vum:124843531 2332.75