Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02883 ATGAAGTTCTGCAAAAAATACCAGGAATACATGCAAGGCCAGGAGAAGAAGCTTCCAGGCGTAGGATTCAAGAAGCTCAAGAAAATCTTGAAGAGGTGCAGGAAAAACTCTCCATCTCAGAAACCCCTTAATGCACCCCTTGCCGCCAAAACCTGCCCAGACCAATGCCCAGTGTGCGATGGAACCTTCTTCCCTTCCCTTCTGAATGAAATGTCAGATGTAGTGGGGTGTTTTAATCAGCGTGCGCAGAAATTGTTGGAGCTGCATCTCGCTTCTGGCTTCAGAAAGTACTTTTTCTGGATCAAAGGCAGATTGCAAGGAAACCATACTGCTCTGGTTCAAGAAGGCAACGATCTTGTCACTTATGCACTCATAAATGCCATTGCAATTAGAAAAATACTCAAGAAATATGATAAGAATTGGGGAGTTAGTAAATCAAGGGAACTAAAGATTCATTATTCGAAGCAAGGGCAATTATTCAAGTCGCAGGTCCAGAGTATGCACAAGGAGATTCTTCAGAGTCCCTGGCTTTCTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACTAAGGTCAAGTCAAGGAAGGCACATGCTCTGTTCGATGGATGTTCTCTCACAATTAAGGATGGGAAGCCCTCCCTTACTTGTGAGCTCTTCGATTCTATCAAATTGGATGTTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGTGGCCACATATTCTGCTATATCTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTAACGGACTTAAGTCTGCAGATTCTAGAAAGAAATGTCCTCTGTGCCGCGAGGACTCTGTATATGAAGGTGCTGTTCACTTGGAAGAACTGAATATTCTGTTAGGCAGAAGCTGTCAGGAATACTGGGAGCAGAGGCTTGAGACTGAGAGGGTGGAGAGGATTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGGGCATTCGTAGGTGTCTAA 1008 0.4395 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKRCRKNSPSQKPLNAPLAAKTCPDQCPVCDGTFFPSLLNEMSDVVGCFNQRAQKLLELHLASGFRKYFFWIKGRLQGNHTALVQEGNDLVTYALINAIAIRKILKKYDKNWGVSKSRELKIHYSKQGQLFKSQVQSMHKEILQSPWLSELMAFHINLRETKVKSRKAHALFDGCSLTIKDGKPSLTCELFDSIKLDVDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVNGLKSADSRKKCPLCREDSVYEGAVHLEELNILLGRSCQEYWEQRLETERVERIKQIKEHWDSQCRAFVGV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02883 335 CDD SPX_BAH1-like 2 158 - -
Vian2g02883 335 SMART ring_2 231 279 IPR001841 -
Vian2g02883 335 SUPERFAMILY RING/U-box 224 283 - -
Vian2g02883 335 CDD RING-HC_BAH1-like 221 294 - -
Vian2g02883 335 ProSitePatterns Zinc finger RING-type signature. 246 255 IPR017907 -
Vian2g02883 335 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Vian2g02883 335 ProSiteProfiles Zinc finger RING-type profile. 231 280 IPR001841 -
Vian2g02883 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 334 IPR033326 -
Vian2g02883 335 Pfam Zinc finger, C3HC4 type (RING finger) 228 282 - -
Vian2g02883 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 333 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02883 Vian-Chr2 49636295 49638741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02883 228 282 C3H Transcription Factor Family AT4G28270 40.000 6.69e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02883 K16275 - gmx:100787904 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02883 2 49636295 49638741 Vian2g02883 2 49636295 49638741 ECH